BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0031.p
         (156 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313837|ref|YP_003777929.1| N-acetylglucosamine-6-phosphate...   134   2e-33

>gi|300313837|ref|YP_003777929.1| N-acetylglucosamine-6-phosphate
           deacetylase [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  134 bits (338), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 94/142 (66%), Gaps = 16/142 (11%)

Query: 16  GWIDGAI-SFGDLICSIDGAQLEFEPADGTPHANDGDYILPGFIDLHVHGGGGXTPGGVR 74
           G I  A+ S   L C  D        A G P   DGDY L   +   VH       GGVR
Sbjct: 249 GAIRAALRSIPRLFCVTDSTA-----AAGMP---DGDYALGRQV---VH----KCAGGVR 293

Query: 75  LADGTLAGSTLTMDQALRNLIAMGLDISEASLRTSTYPADYLGVKERGRLKPGCFADILV 134
           L DGTLAGS LTMDQALRNLI++G+D++EASLRTSTY ADYLG+ +RGRL  GC AD++V
Sbjct: 294 LDDGTLAGSILTMDQALRNLISLGMDVAEASLRTSTYAADYLGLADRGRLATGCHADVVV 353

Query: 135 FDRQFKLKEVYVEGEKIDLAHA 156
            DRQF LK VYVEGE+IDLA A
Sbjct: 354 LDRQFALKAVYVEGEEIDLADA 375



 Score = 75.5 bits (184), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 4/67 (5%)

Query: 1  MSSITQVRGNVLTPHGWIDGAISFGDLICSIDGAQLEFEPADGTPHANDGDYILPGFIDL 60
          M++ T++ GNVLTP GW  G++ F   I SIDG  L  EP       ++GDYILPGFIDL
Sbjct: 1  MNTPTELHGNVLTPQGWTHGSMVFDQRIRSIDGRPLRREPRL----IDEGDYILPGFIDL 56

Query: 61 HVHGGGG 67
          HVHGGGG
Sbjct: 57 HVHGGGG 63


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 500,474
Number of extensions: 19432
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 156
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,250,540
Effective search space: 97542120
Effective search space used: 97542120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)