BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0049.0025.p (405 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309590|ref|YP_003773682.1| TPR repeat containing, SEL1 sub... 113 2e-26 gi|300309588|ref|YP_003773680.1| TPR repeat containing, SEL1 sub... 108 6e-25 >gi|300309590|ref|YP_003773682.1| TPR repeat containing, SEL1 subfamily [Herbaspirillum seropedicae SmR1] Length = 518 Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 104/348 (29%), Positives = 162/348 (46%), Gaps = 40/348 (11%) Query: 16 FTCTKEADRLPTLNPDADQLFKYARWLEKQAGEPH---YDEVARYYRIAAAHGHYKANSN 72 F+C E D P L+ A+ F+ + P Y A ++ AA H+KA N Sbjct: 20 FSCKYEKDSEPILDEQAEDWFREGMAVTSNDLWPDDRDYKRAASLWKKAAQKNHWKAMLN 79 Query: 73 LQKLVSQGQAESPNPSRETVLLAQQLIDAGIPGGYYDMARYLELGYGVKRSHQNALIYYR 132 L L G+ + + + V+L + + G+P Y M RY G GV+++ A ++ Sbjct: 80 LAGLYLDGRGILRD-TEQAVVLVEDAMKMGVPRAYELMGRYHMNGTGVQQNATRAYAFWA 138 Query: 133 KAADLGSPDAQYYVAEQL-APIDIA-------PEIARQMRQCAANQGHGEAAQMLGIDLQ 184 AA+LG +AQ Y+ +L A D A IA QM +C+ Q + EA+ LG+ L Sbjct: 139 LAANLGDAEAQAYLGGKLNATYDDANGSFWGNKSIALQMLRCSYAQENAEASLNLGVSLN 198 Query: 185 TDNLYAAAVQAFQKAVAAGNTESALKLEDSFKGVLPSDTLDYLALPEDLERSRRYKEIKL 244 + Y A+ V G+ SA L SF + T ++ D +R+ RYK I Sbjct: 199 VNGKYEDALNILHDGVRFGSKGSANYLAASFL-IHTELTGQHV----DQDRAERYKAIGD 253 Query: 245 LLRHNESKNPKVPDIDQIVPLPPAKLPHWDGTFQWKKEQDAAVAPAKPDEKLVVRLANDK 304 LLR N + ++P++D+++PLPPA LP+WDG ++ + AKP + + +D Sbjct: 254 LLRLN--PDLRLPNLDKVLPLPPAVLPYWDG------DKQTLIDGAKPVKTASL---DDI 302 Query: 305 RLDPAT----------GLLIPREPLGTP--AKTGSACPESGTWCAQWA 340 + PA+ GL++P EP G + SG W AQ A Sbjct: 303 KPSPASLRQGRAHIPDGLVLPDEPQGGHLIQHLHTDAIISGFWLAQLA 350 >gi|300309588|ref|YP_003773680.1| TPR repeat containing, SEL1 subfamily [Herbaspirillum seropedicae SmR1] Length = 517 Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 105/360 (29%), Positives = 163/360 (45%), Gaps = 36/360 (10%) Query: 4 VPDTTALRA----NLAFTCTKEADRLPTLNPDADQLFK---YARWLEKQAGEPHYDEVAR 56 +P AL+A F C E LN +A+ F+ A + + Y + A+ Sbjct: 6 LPRNMALKAFDPHRKEFPCNYEKYSETPLNEEAETWFREGLAATSFDLWPDDRDYVKAAK 65 Query: 57 YYRIAAAHGHYKANSNLQKLVSQGQAESPNPSRETVLLAQQLIDAGIPGGYYDMARYLEL 116 + +A H++A NL L QG+ + R V L ++++ GIP + M Sbjct: 66 LWSKSAEEKHWQAMLNLASLYIQGKGVGKDTER-AVSLVEEVMKMGIPRAFDFMGTLHIN 124 Query: 117 GYGVKRSHQNALIYYRKAADLGSPDAQYYVAEQLAPIDIAP--------EIARQMRQCAA 168 G GV++ A ++ AA++GS DAQ Y+ E+L P +A ++ +CA Sbjct: 125 GTGVRQDATRAYAFWSLAAEMGSADAQAYLGERLNASRDDPARETWGNKALAYKLMECAH 184 Query: 169 NQGHGEAAQMLGIDLQTDNLYAAAVQAFQKAVAAGNTESALKLEDSFKGVLPSDTLDYLA 228 Q +G AA +LG+ L D A+ V G+ +SA+ L SF+ D A Sbjct: 185 AQENGRAASILGLSLGLDGDQQRALNILHDGVKFGSEKSAIFLAVSFRAG------DATA 238 Query: 229 LPE-DLERSRRYKEIKLLLRHNESKNPKVPDIDQIVPLPPAKLPHWDGTFQW-----KKE 282 + D +R RY I LLR N + ++P++D+++PLPPA LP+WDG Q K Sbjct: 239 QHQVDQDRGDRYGAIAHLLRLN--PDLRLPNLDKVLPLPPAILPYWDGDKQTLIDGAKPV 296 Query: 283 QDAAVAPAKPDEKLVVRLANDKRLDPATGLLIPREPLGTP--AKTGSACPESGTWCAQWA 340 + A++A KP + R GL++P EP G + SG W AQ A Sbjct: 297 KTASLADIKPSPASL----RQGRAHIPDGLVLPDEPQGGHLIQHLHTDAIISGFWLAQLA 352 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.133 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,372,442 Number of extensions: 59935 Number of successful extensions: 187 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 2 Length of query: 405 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 318 Effective length of database: 1,207,925 Effective search space: 384120150 Effective search space used: 384120150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)