BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0049.0024.p (305 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310792|ref|YP_003774884.1| LysR family transcription regul... 237 1e-63 gi|300311724|ref|YP_003775816.1| LysR family transcription regul... 208 5e-55 gi|300311542|ref|YP_003775634.1| LysR family transcription regul... 161 7e-41 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 102 5e-23 gi|300312111|ref|YP_003776203.1| LysR family transcription regul... 100 2e-22 >gi|300310792|ref|YP_003774884.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 237 bits (604), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 127/293 (43%), Positives = 184/293 (62%) Query: 5 QLRFDIGDLQAMVAVVERGGFRAAATAINLSQPALSRRIDKLEDALSVRLFERTTRRVTL 64 ++ + +LQA +AV + FRAAA + ++QPALSRRI+ LE AL RLF+RTTRRV+L Sbjct: 2 RINIETAELQAFIAVARQSSFRAAAEGLFITQPALSRRIENLEQALQERLFDRTTRRVSL 61 Query: 65 TVVGREFYAKAQEILASVENSLLSISDIAGRSGGEVSIACVPSVAYHYLPPVIAQFNAAY 124 T G F AQ ++ +E ++ S+ + V++ACVPSVA + LP V+ ++ ++ Sbjct: 62 TPAGELFLVHAQAVMEELELAVKSVEQRMAQRREHVTVACVPSVANNLLPQVLKRYARSH 121 Query: 125 PNIHVKIIDEGANDVLHCVQRGEADFGVNFIGAQESDIDFDAVMSERFVLACRQDHPLAQ 184 N+ V+IIDE A DVL V++GEADFGVNFIGAQE++IDF + ER++ HPLA Sbjct: 122 ANVRVRIIDESAADVLESVRKGEADFGVNFIGAQEAEIDFAELTRERYLAVMPTHHPLAA 181 Query: 185 RKSVKWREIDQYPYVGVARSSGNRLVLDQALAATEVRPSAAFEVRHVATSLAWVAAGLGV 244 S+ W+ + V V+ SSGNR ++D A + RP +E HVA +++ VAAGLGV Sbjct: 182 HASLNWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVIQYETNHVAGAISLVAAGLGV 241 Query: 245 AAVPHLAMPTDGYSMLKAVPLVEPKVERTLGLLRKKGRKLSSSAQYLYDALKN 297 A +P LA+ Y + A P+ P + R +GL+ KGR L +A L AL++ Sbjct: 242 ALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAAATLAQALRD 294 >gi|300311724|ref|YP_003775816.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 297 Score = 208 bits (529), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 180/292 (61%) Query: 6 LRFDIGDLQAMVAVVERGGFRAAATAINLSQPALSRRIDKLEDALSVRLFERTTRRVTLT 65 ++ DI +QA VA+ + G F+ AA A++++Q A++ R+ KLED L V L ERTTR + LT Sbjct: 1 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALT 60 Query: 66 VVGREFYAKAQEILASVENSLLSISDIAGRSGGEVSIACVPSVAYHYLPPVIAQFNAAYP 125 +GR+F +A+ +LA + +L+ I + G+VSIACVP+V YLP ++ ++A YP Sbjct: 61 EIGRDFLPQARRLLAELAGALVEIRETGIARRGDVSIACVPTVGVQYLPRILQAYSARYP 120 Query: 126 NIHVKIIDEGANDVLHCVQRGEADFGVNFIGAQESDIDFDAVMSERFVLACRQDHPLAQR 185 + +KI+D ++ V V R E +FG++ G ++ A+ +R+VL C +DHPLA+R Sbjct: 121 HNRIKILDHASSAVAEAVLRREVEFGIHIAGEHHPELISVALTEDRYVLICPKDHPLARR 180 Query: 186 KSVKWREIDQYPYVGVARSSGNRLVLDQALAATEVRPSAAFEVRHVATSLAWVAAGLGVA 245 + + WR++ YP + S NR +LD L A + +EV+ +T++ VA G+GVA Sbjct: 181 RRIAWRQLQSYPLIFAGEVSSNRALLDPTLKANGFALRSFYEVQRSSTAVGLVAQGVGVA 240 Query: 246 AVPHLAMPTDGYSMLKAVPLVEPKVERTLGLLRKKGRKLSSSAQYLYDALKN 297 VP LA+ Y ++ + LV+P V R+L L+ +K LS +AQ LYD ++ Sbjct: 241 VVPKLAIQEGAYPTVRVIELVDPVVSRSLVLITRKAAHLSPAAQALYDMIRE 292 >gi|300311542|ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 161 bits (407), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 157/290 (54%), Gaps = 9/290 (3%) Query: 13 LQAMVAVVERGGFRAAATAINLSQPALSRRIDKLEDALSVRLFERTTRRVTLTVVGREFY 72 LQA +A+ + F AA ++SQ A S I K+E A RLFER TR VTLT G F Sbjct: 10 LQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTLTPEGELFV 69 Query: 73 AKAQEILASVENSLLSISDIAGRSGGEVSIACVPSVAYHYLPPVIAQFNAAYPNIHVKII 132 A+++++ +E + +SD R G V+IA +PS+A +LPPV+A + YP + V++ Sbjct: 70 QVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPGVTVELF 129 Query: 133 DEGANDVLHCVQRGEADFGVNFIGAQESDIDFDAVMSERFVLACRQDHPLAQRKSVKWRE 192 D ++ L ++ G+ D + G + D + S+ F L CR+DH LA ++ +K + Sbjct: 130 DAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLASKRRIKVPQ 189 Query: 193 IDQYPYVGVARSSGNRLVLDQALAATEVRPSA----AFEVRHVATSLAWVAAGLGVAAVP 248 + + +ARS+ R LD L RP EV H+AT A + +GLGV+ VP Sbjct: 190 LAGCEMIHLARSTSVRQHLDAVL-----RPGGVIHTGLEVEHLATVAALIESGLGVSVVP 244 Query: 249 HLAMPTDGYSMLKAVPLVEPKVERTLGLLRKKGRKLSSSAQYLYDALKNK 298 L + L A+PL P+++R L ++ K R LS +AQ L + ++ K Sbjct: 245 ELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGK 294 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 102 bits (253), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 122/256 (47%), Gaps = 6/256 (2%) Query: 18 AVVERGGFRAAATAINLSQPALSRRIDKLEDALSVRLFERTTRRVTLTVVGREFYAKAQE 77 V E F AA +++SQP L+R+I LE L +LF+R+ R + LT G+ FY E Sbjct: 12 TVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTAAGKYFYRDTTE 71 Query: 78 ILASVENSLLSISDIAGRSGGEVSIACVPSVAYHYLPPVIAQFNAAYPNIHVKIIDEGAN 137 I ++E + ++S + G + + + S AY+ LP V ++AAYP + +++ + N Sbjct: 72 IFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPEVDMRLTEYVPN 131 Query: 138 DVLHCVQRGEADFGVNFIGAQESDIDFDAVMSERFVLACRQDHPLAQRKSVKWREIDQYP 197 + ++ + D G+ + +D + +E + +DH LA R+S+ E+ + Sbjct: 132 LLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGRQSISAAELAEDA 191 Query: 198 YVGVARSSGNRL--VLDQALAATEVRPSAAFEVRHVATSLAWVAAGLGVAAVPH----LA 251 ++ + R + ++ Q RP E T + V GLGVA VP + Sbjct: 192 FISIPRMIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGVALVPTSMQAMH 251 Query: 252 MPTDGYSMLKAVPLVE 267 + T + L P+VE Sbjct: 252 LDTTVFKPLIGAPMVE 267 >gi|300312111|ref|YP_003776203.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 128/292 (43%), Gaps = 1/292 (0%) Query: 8 FDIGDLQAMVAVVERGGFRAAATAINLSQPALSRRIDKLEDALSVRLFERTTRRVTLTVV 67 FD+ DL+ + + E +A +NLS A S RI +LE RL R ++ V LT Sbjct: 3 FDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLTPA 62 Query: 68 GREFYAKAQEILASVENSLLSISDIAGRSGGEVSIACVPSVAYHYLPPVIAQFNAAYPNI 127 G AQ+ + VE+ + G + I + ++P ++ +F A +P + Sbjct: 63 GHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHPQV 122 Query: 128 HVKIIDEGANDVLHCVQRGEADFGVNFIGAQESDIDFDAVMSERFVLACRQDHPLAQRKS 187 +V + + +D+L +Q G AD G+ Q + ++R VLA +HPLA S Sbjct: 123 NVALEERLNHDILRGIQEGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADAPS 182 Query: 188 VKWREIDQYPYVGVARSSGNRLVLDQALAATEVRPSAAFEVRHVATSLAWVAAGLGVAAV 247 + + + +Y ++G+ S L + +A R +VR + +G+ + Sbjct: 183 LPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGIGIL 242 Query: 248 PHLAMPTDGYSM-LKAVPLVEPKVERTLGLLRKKGRKLSSSAQYLYDALKNK 298 P A +M L V L +P R ++ + LS A+ L + ++ + Sbjct: 243 PRSAAQRHQQTMQLSVVELSDPWSVRERSMVVQDIDTLSPHARNLVEFIREQ 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 759,615 Number of extensions: 25789 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 75 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 75 Length of query: 305 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 220 Effective length of database: 1,217,395 Effective search space: 267826900 Effective search space used: 267826900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)