BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0015.p
         (188 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310328|ref|YP_003774420.1| porin signal peptide protein [H...    72   3e-14
gi|300309527|ref|YP_003773619.1| outer membrane protein (porin) ...    66   1e-12
gi|300313580|ref|YP_003777672.1| outer membrane porin [Herbaspir...    66   2e-12
gi|300310676|ref|YP_003774768.1| outer membrane protein (porin) ...    61   6e-11
gi|300310663|ref|YP_003774755.1| outer membrane porin, OmpC fami...    57   7e-10

>gi|300310328|ref|YP_003774420.1| porin signal peptide protein
          [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score = 71.6 bits (174), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 8/78 (10%)

Query: 11 SFAGAAHAQTSIASSGVTIYGIINPSLTYTDKVAVVTPGNPTGTGSRLSMDTAVAQGSRI 70
          +FAGAAHAQ    SS +TIYG I+ SLTYT+K+A     +   TGS  ++++ + +GSR+
Sbjct: 13 AFAGAAHAQ----SSSITIYGAIDASLTYTNKIAT----DGKNTGSLTAVESGLVKGSRL 64

Query: 71 GFKGVEDLGGGLKEALIL 88
          G KG EDLGGGLK    L
Sbjct: 65 GIKGSEDLGGGLKAVFTL 82


>gi|300309527|ref|YP_003773619.1| outer membrane protein (porin)
          signal peptide protein [Herbaspirillum seropedicae
          SmR1]
          Length = 390

 Score = 66.2 bits (160), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 43/65 (66%), Gaps = 6/65 (9%)

Query: 25 SGVTIYGIINPSLTYTDKVAVVTPGNPTG-TGSRLSMDTAVAQGSRIGFKGVEDLGGGLK 83
          S VTIYGI++  + Y  KVA      PTG TGS+ S+++ V QGSRIGFKG EDLGGGL 
Sbjct: 22 SSVTIYGIVDTGVVYQSKVAT-----PTGGTGSKFSLNSGVIQGSRIGFKGTEDLGGGLS 76

Query: 84 EALIL 88
              L
Sbjct: 77 AVFNL 81


>gi|300313580|ref|YP_003777672.1| outer membrane porin
          [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score = 66.2 bits (160), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 40/64 (62%)

Query: 25 SGVTIYGIINPSLTYTDKVAVVTPGNPTGTGSRLSMDTAVAQGSRIGFKGVEDLGGGLKE 84
          S VTIYGI++  + Y+ KV          TGS+  +++ V QGSRIGFKGVEDLGGGL  
Sbjct: 22 SSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSGVIQGSRIGFKGVEDLGGGLSA 81

Query: 85 ALIL 88
             L
Sbjct: 82 VFNL 85


>gi|300310676|ref|YP_003774768.1| outer membrane protein (porin)
          signal peptide protein [Herbaspirillum seropedicae
          SmR1]
          Length = 352

 Score = 61.2 bits (147), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 9/73 (12%)

Query: 16 AHAQTSIASSGVTIYGIINPSLTYTDKVAVVTPGNPTGTGSRLSMDTAVAQGSRIGFKGV 75
          AHAQ+S     V+IYG+I+  LTY        P +  G    L MD+ +AQGSRIGFKG 
Sbjct: 18 AHAQSS-----VSIYGLIDLGLTYYSSA----PKSGGGGARLLRMDSGIAQGSRIGFKGT 68

Query: 76 EDLGGGLKEALIL 88
          EDLGGG+     L
Sbjct: 69 EDLGGGMNAFFTL 81


>gi|300310663|ref|YP_003774755.1| outer membrane porin, OmpC
          family protein [Herbaspirillum seropedicae SmR1]
          Length = 346

 Score = 57.4 bits (137), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 9/63 (14%)

Query: 21 SIASSGVTIYGIINPSLTYTDKVAVVTPGNPTGTGSRLSMDTAVAQGSRIGFKGVEDLGG 80
          ++A S VT+YG+I+  + YT         N TG GS  S+D+   Q SR+GFKG EDLGG
Sbjct: 18 ALAQSNVTLYGVIDTYMGYT---------NATGKGSVASLDSGGYQASRVGFKGSEDLGG 68

Query: 81 GLK 83
          GL+
Sbjct: 69 GLR 71


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 500,069
Number of extensions: 18498
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 8
Length of query: 188
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,241,070
Effective search space: 134035560
Effective search space used: 134035560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)