BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0049.0013.p (235 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 254 3e-69 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 217 7e-58 gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 209 2e-55 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 206 2e-54 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 201 6e-53 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 254 bits (650), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 127/220 (57%), Positives = 158/220 (71%), Gaps = 2/220 (0%) Query: 11 AIRLTGISKSWGAHQVIKSLDLEFGRGQLVALLGPSGCGKSTLLRLLAGLETPDSGRVEI 70 AI L G+ K WG Q ++++D E GQ LLGPSGCGKST LRL+AGL+ P SG + I Sbjct: 3 AISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHI 62 Query: 71 DGKDVTAAAPSARGLSMVFQSYALFPHLNIAENICFGMQVRGVHAAERRQRLQDALALTN 130 G+DVT P+ R +SMVFQSYALFPHL++ +NI FG++VR A RL+ + Sbjct: 63 GGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILG 122 Query: 131 LQGLEQRKPAQLSGGQRQRVALARAIVAGHSICLMDEPLSNLDAKLRHSVRHEIRALQQR 190 L L +R+PAQLSGGQ+QRVAL RAI+A +CLMDEPLSNLDA+LR +R EIRALQQ+ Sbjct: 123 LAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQ 182 Query: 191 LGMTVVYVTHDQTEAMGMADKIVLMNAGGIVQSGXRQPAD 230 L MT+VYVTHDQTEAM MAD+++L+ G I Q PAD Sbjct: 183 LNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAA--PAD 220 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 217 bits (552), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 113/229 (49%), Positives = 158/229 (68%), Gaps = 7/229 (3%) Query: 10 VAIRLTGISKSWG-AHQVIKSLDLEFGRGQLVALLGPSGCGKSTLLRLLAGLETPDSG-R 67 V+IRL+ +KS+ + ++ LDL+ G+ + LLGPSGCGK+T LR++AGLE PD G R Sbjct: 8 VSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGR 67 Query: 68 VEIDGKDVTAAAPSARGLSMVFQSYALFPHLNIAENICFGMQVRGVHAAERRQRLQDALA 127 V +DVT RG+ MVFQ+YALFP++++ ENI +GM++R + A ER +R++ L Sbjct: 68 VLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVERLLE 127 Query: 128 LTNLQGLEQRKPAQLSGGQRQRVALARAIVAGHSICLMDEPLSNLDAKLRHSVRHEIRAL 187 + +LQGL R+ QLSGGQ+QRVALARA+ + L+DEPL+ LDAKLR +VR ++ L Sbjct: 128 MVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKL 187 Query: 188 QQRLGMTVVYVTHDQTEAMGMADKIVLMNAGGIVQSGXRQ-----PADD 231 + LG+T +YVTHDQ EAM + D+IV+M G I Q G Q PA+D Sbjct: 188 LRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPAND 236 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 209 bits (531), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 99/222 (44%), Positives = 149/222 (67%), Gaps = 1/222 (0%) Query: 2 QETNMNTDVAIRLTGISKSW-GAHQVIKSLDLEFGRGQLVALLGPSGCGKSTLLRLLAGL 60 QE+ +DV ++ G+ K++ G + ++K+LDL+ RG+ + LLGPSG GK+T L +LAG Sbjct: 12 QESVQQSDVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGF 71 Query: 61 ETPDSGRVEIDGKDVTAAAPSARGLSMVFQSYALFPHLNIAENICFGMQVRGVHAAERRQ 120 E P G + +DG+ + P R + MVFQ+YALFPH+ IA+N+ + + VR + A R Sbjct: 72 EFPTGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREA 131 Query: 121 RLQDALALTNLQGLEQRKPAQLSGGQRQRVALARAIVAGHSICLMDEPLSNLDAKLRHSV 180 +++ AL + + R P QLSGGQ+QRVALAR +V + LMDEPL LD +LR + Sbjct: 132 KVKQALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHM 191 Query: 181 RHEIRALQQRLGMTVVYVTHDQTEAMGMADKIVLMNAGGIVQ 222 + E++AL +RLG+T VYVTHDQ+EA+ M+D++ + + G I Q Sbjct: 192 QLELKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQ 233 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 206 bits (523), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 105/223 (47%), Positives = 144/223 (64%), Gaps = 2/223 (0%) Query: 11 AIRLTGISKSWGAHQVIKSLDLEFGRGQLVALLGPSGCGKSTLLRLLAGLETPDSGRVEI 70 ++++ + K +G+ Q+I+ +D++ G+ L+GPSGCGKSTLLR+LAGLE G + I Sbjct: 3 SVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILI 62 Query: 71 DGKDVTAAAPSARGLSMVFQSYALFPHLNIAENICFGMQVRGVHAAERRQRLQDALALTN 130 G V P R ++MVFQ+YAL+PH+ + +N+ F + + A +R++ A + Sbjct: 63 GGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADILG 122 Query: 131 LQGLEQRKPAQLSGGQRQRVALARAIVAGHSICLMDEPLSNLDAKLRHSVRHEIRALQQR 190 L L R P QLSGGQRQRVA+ RAIV + L DEPLSNLDAKLR +R EI+ L QR Sbjct: 123 LNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQR 182 Query: 191 LGMTVVYVTHDQTEAMGMADKIVLMNAGGIVQSGXRQPADDAD 233 L T +YVTHDQ EAM MAD+IV+M G + Q G +P D D Sbjct: 183 LKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRG--RPLDLYD 223 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 201 bits (510), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 108/214 (50%), Positives = 143/214 (66%), Gaps = 2/214 (0%) Query: 11 AIRLTGISKSWG-AHQVIKSLDLEFGRGQLVALLGPSGCGKSTLLRLLAGLETPDSGRVE 69 +I L K++G A VI+++DL+ G + LGPSGCGKSTLLR +AGLE SG + Sbjct: 3 SITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGDLF 62 Query: 70 IDGKDVTAAAPSARGLSMVFQSYALFPHLNIAENICFGMQVRGVHAAERRQRLQDALALT 129 I GK V + R ++MVFQSYALFPH+ + EN+ FG+ + + AE Q++++A + Sbjct: 63 IGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARIL 122 Query: 130 NLQGLEQRKPAQLSGGQRQRVALARAIVAGHSICLMDEPLSNLDAKLRHSVRHEIRALQQ 189 L+ L QRKP +LSGGQRQRVA+ RAIV + L DEPLSNLDA LR R EI L + Sbjct: 123 QLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARLHR 182 Query: 190 RLGM-TVVYVTHDQTEAMGMADKIVLMNAGGIVQ 222 + +VVYVTHDQ EAM +AD+IVL++AG Q Sbjct: 183 QFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQ 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 752,951 Number of extensions: 31472 Number of successful extensions: 537 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 300 Number of HSP's successfully gapped: 150 Length of query: 235 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 153 Effective length of database: 1,231,600 Effective search space: 188434800 Effective search space used: 188434800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)