BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0009.p
         (88 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease ...    95   1e-21

>gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 291

 Score = 94.7 bits (234), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 73/86 (84%)

Query: 3   PLLMPTTLFVLINALINSVRLIDHLFILTKGGPDNASKLILYWIWEMAFAYLDQAGAAVM 62
           PLLMPTTLFVLINALIN+ RL+DH+ ++TKGGPDNAS L+LY+I+E+ FA+ D + AA +
Sbjct: 206 PLLMPTTLFVLINALINAFRLVDHIVVMTKGGPDNASSLLLYYIYEVGFAFWDSSYAAAL 265

Query: 63  TVLVLAVLGLIAALQFMFFDRRIHYR 88
           TV++LA+LGLIA ++F   DRR HY+
Sbjct: 266 TVVLLALLGLIALVKFRVLDRRTHYQ 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.335    0.147    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 208,766
Number of extensions: 5566
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 88
Length of database: 1,619,870
Length adjustment: 58
Effective length of query: 30
Effective length of database: 1,345,240
Effective search space: 40357200
Effective search space used: 40357200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 123 (52.0 bits)