BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0049.0008.p (188 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312389|ref|YP_003776481.1| sugar ABC transporter permease ... 227 4e-61 gi|300313087|ref|YP_003777179.1| sn-glycerol-3-phosphate ABC tra... 104 4e-24 gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease ... 95 3e-21 gi|300313834|ref|YP_003777926.1| sugar ABC transporter permease ... 74 5e-15 gi|300309783|ref|YP_003773875.1| sugar ABC transporter permease ... 70 9e-14 >gi|300312389|ref|YP_003776481.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 276 Score = 227 bits (579), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 117/188 (62%), Positives = 148/188 (78%) Query: 1 LCTLAGFAFARFQFCGKNAVFVLVLLQLFVLPEILIVENYAMVTRLGLFDTPFGMAVPYM 60 L TLA +AFARF F G N +F+LVLLQL V+P+ILIVENY + LGL DT + +PY Sbjct: 89 LATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLRDTILSIGLPYF 148 Query: 61 ASAFGIFLLRQAFMQIPRELEEAARIEGCGWFGVLWRVYMPAAKPVYLAYALVSVATHWN 120 ASAFGIFLLRQ F +PREL+EAA +EG + +L +VY+P A+P+Y+A+ LVSV+THWN Sbjct: 149 ASAFGIFLLRQTFKTVPRELDEAATVEGASAWQILMQVYVPLARPIYIAFGLVSVSTHWN 208 Query: 121 NFLWPLIVTNSPATRPLTVGLSLFGAPESGVNISIISATTLLAIAPLLAGFLVFQRQFIQ 180 NFLWPLIVTNS +RPLTVGL +F + + GV+ SII+A TL+ APLL FL+FQRQF+Q Sbjct: 209 NFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSIITAATLMTSAPLLLAFLLFQRQFVQ 268 Query: 181 AFLRAGIR 188 +F+RAGIR Sbjct: 269 SFMRAGIR 276 >gi|300313087|ref|YP_003777179.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 104 bits (260), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 103/186 (55%), Gaps = 1/186 (0%) Query: 1 LCTLAGFAFARFQFCGKNAVFVLVLLQLFVLPEILIVENYAMVTRLGLFDTPFGMAVPYM 60 + L+ FA F+F G+ F ++ + L + E+ I Y +V+ LG+ ++ G++VP + Sbjct: 96 ISMLSAFAIVYFRFPGRGLFFWMIFVTLMLPVEVRITPTYQVVSDLGMLNSYAGLSVPLI 155 Query: 61 ASAFGIFLLRQAFMQIPRELEEAARIEGCGWFGVLWRVYMPAAKPVYLAYALVSVATHWN 120 ASA FL RQ F+ +P EL EAARI+G G L V P ++ +A ++ WN Sbjct: 156 ASATATFLFRQFFLTVPDELAEAARIDGAGPLRFLKDVLWPLSRTNVIALFVIMFIYGWN 215 Query: 121 NFLWPLIVTNSPATRPLTVGL-SLFGAPESGVNISIISATTLLAIAPLLAGFLVFQRQFI 179 +LWPLI+ + P+ +G+ +L +S V +++ AT +LA+ P +V Q+ F+ Sbjct: 216 QYLWPLIIATDTSMYPIGIGIKTLISGGDSAVEWNLVMATMILAMLPPGLVVVVMQKWFV 275 Query: 180 QAFLRA 185 + + + Sbjct: 276 KGLVDS 281 >gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 95.1 bits (235), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 5/182 (2%) Query: 1 LCTLAGFAFARFQFCGKNAVFVLVLLQLFVLPEILIVENYAMVTRLGLFDTPFGMAVPYM 60 L +AGFA + +QF G +F + FV +IL++ + LGLF+T GM + ++ Sbjct: 94 LAAMAGFALSTYQFRGNTVLFATFVACNFVPQQILMIPVRDLSLSLGLFNTITGMMLFHI 153 Query: 61 A--SAFGIFLLRQAFMQIPRELEEAARIEGCGWFGVLWRVYMPAAKPVYLAYALVSVATH 118 A + F LR Q+P E+ EAARIEG + V +R+ +P +P A A++ Sbjct: 154 AMQTGFCTLFLRNFIKQLPFEMIEAARIEGASEWTVFYRIVLPLIRPALAALAVLVFTFV 213 Query: 119 WNNFLWPLIVTNSPATRPLTVGL-SLFGAPESGVNISIISATTLLAIAPLLAGFLVFQRQ 177 WN++ W L++T P+TVG+ +L G + N ++SA ++LA P + F V Q+Q Sbjct: 214 WNDYFWALVLTQGDDVAPITVGVAALRGQWTTAWN--LVSAGSILAALPSVILFFVMQKQ 271 Query: 178 FI 179 F+ Sbjct: 272 FV 273 >gi|300313834|ref|YP_003777926.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 300 Score = 74.3 bits (181), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 3/187 (1%) Query: 4 LAGFAFARFQFCGKNAVFVLVLLQLFVLPEILIVENYAMVTRLGLFDTPFGMAVPYMASA 63 +A +A ++F G A+ + + + + + V +V L L +T + + Y A Sbjct: 115 MAAWALTEYRFFGNRALNFFIAIGIMIPIRLGTVSILQLVVALDLINTRTALVLVYTAQG 174 Query: 64 F--GIFLLRQAFMQIPRELEEAARIEGCGWFGVLWRVYMPAAKPVYLAYALVSVATHWNN 121 + +L + QIP EL++AAR +G G + +RV +P +P A+ ++ WN+ Sbjct: 175 LPLAVMILSEFMRQIPGELKDAARCDGVGELSIFFRVILPLLRPAIATVAVFTMIPAWND 234 Query: 122 FLWPLIVTNSPATRPLTVGLSLFGAPESGVNISIISATTLLAIAPLLAGFLVFQRQFIQA 181 +PLI+ TR +T+G+ F + S+++A + +A+ P+L ++ F RQ I+ Sbjct: 235 LWFPLILAPGEDTRTVTLGVQQFIGQYATDWNSVLAALS-MAVIPVLLLYMAFSRQLIRG 293 Query: 182 FLRAGIR 188 ++ Sbjct: 294 LTSGAVK 300 >gi|300309783|ref|YP_003773875.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 271 Score = 70.5 bits (171), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 98/187 (52%), Gaps = 6/187 (3%) Query: 5 AGFAFARFQFCGKNAVFVLVLLQLFVLPEI-LIVENYAMVTRLGLFDTPFGMAVPY--MA 61 A ++ A F G+ +L +L ++P + +++ Y M GL DT G+ + Y + Sbjct: 88 AAYSMAFFP-TGRTQKLLLWMLSTKMMPAVGVLIPIYLMAKNTGLLDTVTGLTIIYTLIN 146 Query: 62 SAFGIFLLRQAFMQIPRELEEAARIEGCGWFGVLWRVYMPAAKPVYLAYALVSVATHWNN 121 +++ F +P+E+ EAARI+G + + + +P A P + AL+ V WN Sbjct: 147 LPIAVWMAFTYFNDVPKEILEAARIDGANAWQEMIYLLLPTAMPGLASTALLLVILSWNE 206 Query: 122 FLWPLIVTNSPATRPLTVGLSLFGAPESGVNISIISATTLLAIAPLLAGFLVFQRQFIQA 181 W L +T+ A PLTV ++ + PE G+ + +SA +LLAIAP++A + Q+Q ++ Sbjct: 207 AFWSLNLTSVNAA-PLTVFIASYSNPE-GLFWAKLSAASLLAIAPIMALGWLAQKQLVRG 264 Query: 182 FLRAGIR 188 ++ Sbjct: 265 LTFGAVK 271 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.332 0.144 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 509,601 Number of extensions: 19375 Number of successful extensions: 116 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 9 Length of query: 188 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 108 Effective length of database: 1,241,070 Effective search space: 134035560 Effective search space used: 134035560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 128 (53.9 bits)