BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0007.p
         (252 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate A...   429   e-121
gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate A...   174   8e-45

>gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 341

 Score =  429 bits (1102), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/237 (87%), Positives = 220/237 (92%)

Query: 16  SKARGIPRSEVTGLGALSTSPLWLNTNNPNVKSLKDFTSKDKIAIPGIKTSLSAVLLQMA 75
           SKA GIPRSEV GLGALSTSPLWLNTNNPNVKSLKDFT KDKIAIPGIKTSLSAVLLQMA
Sbjct: 105 SKAHGIPRSEVVGLGALSTSPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMA 164

Query: 76  AAKTFGIENYAKLDPLTVSLSHPEALGSLLSGKTEITGHFTSPPFSYQEAKDPKIHRVLN 135
           AAKTFGIENYAKLDPLTVSLSHPEA+ SL+SGKTEIT HFTSPPFSYQEAK P I RVLN
Sbjct: 165 AAKTFGIENYAKLDPLTVSLSHPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLN 224

Query: 136 SSEVLGHITIDVVFALKQFTEKNPKLTQAFMEAQEEANAYIAKNRKGAAETFLRVSKMKL 195
           S++VLGHITIDVVFALK FT+KNPKLTQAFM AQEEANAYIAKNRKGAAE FLRVSK+KL
Sbjct: 225 STDVLGHITIDVVFALKSFTDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKL 284

Query: 196 TQDEVEKMLADPDTQFTTTPEDIMQYVVFMDKAGTIKTKPAVWSDLFVPAFKTRKGS 252
            Q+EVE+MLADP T+FT+TP DIMQYVVFM KAGTIKTKPAVW ++FVPAFK RKGS
Sbjct: 285 PQEEVEQMLADPGTEFTSTPVDIMQYVVFMSKAGTIKTKPAVWHEMFVPAFKERKGS 341


>gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 342

 Score =  174 bits (440), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 143/236 (60%), Gaps = 2/236 (0%)

Query: 19  RGIPRSEVTGLGALSTSPLWLNTNNPNVKSLKDFTSKDKIAIPGIKTSLSAVLLQMAAAK 78
           R   R  V G  +L   P +L +NNP VK++ DF+ KD+IA+P +  S+ + +LQ+A+AK
Sbjct: 107 RTYGRQNVRGAASLGNFPYYLVSNNPKVKTIADFSDKDRIALPAVGVSVQSRVLQLASAK 166

Query: 79  TFGIENYAKLDPLTVSLSHPEALGSLLSGKTEITGHFTSPPFSYQE-AKDPKIHRVLNSS 137
            +G   Y +LD +++++ HP+A  +++SG TEITGHF +PPF  QE A +P  H VL S 
Sbjct: 167 LWGDAQYNRLDKISIAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSY 226

Query: 138 EVLGH-ITIDVVFALKQFTEKNPKLTQAFMEAQEEANAYIAKNRKGAAETFLRVSKMKLT 196
           +VLG   +  V++A ++F + NPK  +AF++A EE  ++I  N   AA+ +L+V+K    
Sbjct: 227 DVLGGPSSATVLYATEKFRKDNPKTYRAFLDALEETASFIRANPDKAADIYLKVNKGNTD 286

Query: 197 QDEVEKMLADPDTQFTTTPEDIMQYVVFMDKAGTIKTKPAVWSDLFVPAFKTRKGS 252
           +  + +++ +P+ QF   P++      FM + G IK KPA   D F      + GS
Sbjct: 287 RKLLLQIIKNPEVQFKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDDPHVQGGS 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 682,152
Number of extensions: 23690
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 2
Length of query: 252
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,226,865
Effective search space: 207340185
Effective search space used: 207340185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)