BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0049.0004.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 479 e-137 gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate A... 333 7e-93 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 215 3e-57 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 190 9e-50 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 177 6e-46 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 479 bits (1234), Expect = e-137, Method: Compositional matrix adjust. Identities = 227/254 (89%), Positives = 240/254 (94%) Query: 14 TPVDPSRPLLEIDNVTLQYKTSDSLVTATQQVSFNVHPSDRYILLGPSGCGKSTLLKAIG 73 + +DPSRPLLEID VTLQYKT+DSLVTATQ VSFNVHP DRYILLGPSGCGKSTLLKAIG Sbjct: 9 SSIDPSRPLLEIDRVTLQYKTTDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIG 68 Query: 74 GYLQPTSGKIRLKGREVTQPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGKEAS 133 GYLQPTSG IRLKGREV +PGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQG+ A+ Sbjct: 69 GYLQPTSGAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGRAAA 128 Query: 134 DRAAYYIEKVGLAKFIDSYPHTLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRK 193 +RA YYI KVGLAKFIDSYPH LSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRK Sbjct: 129 ERAEYYISKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRK 188 Query: 194 MQDELLRLWDDTNFTVLFVTHSIEEAIRIGTRILLLSPHPGQVRAELNSIPPEEMGTASQ 253 MQDELLRLWDDT FTVLFVTHSIEEAIR+GTRILLL+PHPGQVRAELNSI P ++GTA+Q Sbjct: 189 MQDELLRLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNSIDPSQLGTAAQ 248 Query: 254 AQLEQRINDMLFAH 267 A+LE RINDMLFAH Sbjct: 249 AELETRINDMLFAH 262 >gi|300309402|ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 333 bits (855), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 158/257 (61%), Positives = 207/257 (80%), Gaps = 2/257 (0%) Query: 11 SSVTPVDPSRPLLEIDNVTLQYKTSDSLVTATQQVSFNVHPSDRYILLGPSGCGKSTLLK 70 +S+ D PLL++D V+LQY+++ ++V AT +VSF+V+P+DR++LLGPSGCGKS+LLK Sbjct: 9 TSLAAQDLPAPLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSGCGKSSLLK 68 Query: 71 AIGGYLQPTSGKIRLKGREVTQPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGK 130 ++ G+L P +G+IRL G+ + QPGPDR++VFQEFDQL PWKTV QNV F L AS L + Sbjct: 69 SVAGFLPPAAGEIRLDGQVLHQPGPDRIVVFQEFDQLPPWKTVLQNVMFPLLASRTLGKR 128 Query: 131 EASDRAAYYIEKVGLAKFIDSYPHTLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALT 190 +A++RA +Y++KVGLA+F D+YPHTLSGGMK RV+IAR +AM+P +LLMDEPFAALDALT Sbjct: 129 DAAERARHYLDKVGLARFADAYPHTLSGGMKARVAIARALAMQPKMLLMDEPFAALDALT 188 Query: 191 RRKMQDELLRLWDDTNFTVLFVTHSIEEAIRIGTRILLLSPHPGQVRAELNS--IPPEEM 248 RRKMQ+ELL LWD+ FT+LFVTHSIEEA+ +G RILLLSPHPG+VRAE+NS + Sbjct: 189 RRKMQEELLALWDEVRFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAEINSHQYDLSSL 248 Query: 249 GTASQAQLEQRINDMLF 265 G Q QRI+ +LF Sbjct: 249 GGVGFQQTAQRIHRLLF 265 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 215 bits (548), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 147/222 (66%), Gaps = 2/222 (0%) Query: 19 SRPLLEIDNVTLQYKTSDSLVTATQQVSFNVHPSDRYILLGPSGCGKSTLLKAIGGYLQP 78 + P + I V +KT D V A + ++ ++ LLGPSGCGKSTLL AI G+ P Sbjct: 6 ASPRIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALP 65 Query: 79 TSGKIRLKGREVTQPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGKEASDRAAY 138 +SG+I + V++PGPDR MVFQE+ L PW TV QNV F L G + E R Sbjct: 66 SSGQILTDDKVVSEPGPDRGMVFQEY-ALFPWMTVEQNVAFGLEIKGTPKA-EIHQRVTQ 123 Query: 139 YIEKVGLAKFIDSYPHTLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDEL 198 ++K+GL F +P LSGGM+QRV+IAR +A++ ++LMDEPF ALDALTRR +QDEL Sbjct: 124 LLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDEL 183 Query: 199 LRLWDDTNFTVLFVTHSIEEAIRIGTRILLLSPHPGQVRAEL 240 LR+WD+ T++FVTHSIEEAI + RI++++ PG V+ ++ Sbjct: 184 LRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDM 225 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 190 bits (483), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 95/222 (42%), Positives = 145/222 (65%), Gaps = 3/222 (1%) Query: 22 LLEIDNVTLQYKTSDS-LVTATQQVSFNVHPSDRYILLGPSGCGKSTLLKAIGGYLQPTS 80 +L+++N ++ + D V A +VS ++ + LG SGCGKSTLL A+ G+L + Sbjct: 1 MLKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSE 60 Query: 81 GKIRLKGREVTQPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGKEASDRAAYYI 140 G+I L G+ V+ PG +R +VFQ+ D LLPWK+V+ NV L +G + ++ +RA + Sbjct: 61 GRISLDGQPVSGPGAERGVVFQK-DSLLPWKSVQDNVALGLKFAG-VSKSDSRERAQELL 118 Query: 141 EKVGLAKFIDSYPHTLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLR 200 VGL F + P+ LSGGM+QRV +AR +A P +LLMDEPF ALD++TR +MQ+ L+ Sbjct: 119 RLVGLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVS 178 Query: 201 LWDDTNFTVLFVTHSIEEAIRIGTRILLLSPHPGQVRAELNS 242 +W T V F+THSIEEA+ +GT ++++SP PG++ A + Sbjct: 179 VWARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRIVARFET 220 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 177 bits (450), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 101/247 (40%), Positives = 150/247 (60%), Gaps = 10/247 (4%) Query: 21 PLLEIDNVTLQYKTSDSLVT-ATQQVSFNVHPSDRYILLGPSGCGKSTLLKAIGGYLQPT 79 P +E+ NV+ ++ T+D T A + S +V + ++GP+GCGKST L I G L+PT Sbjct: 20 PAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPT 79 Query: 80 SGKIRLKGREVTQPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGKEASDRAAYY 139 G++R+ G+ V P VFQ D + PW++VR+NV G+ + +A A + Sbjct: 80 LGEVRVMGQPVNGIDPRIGFVFQN-DAVFPWRSVRENVAAGPLFRGQPKA-QAHALADEW 137 Query: 140 IEKVGLAKFIDSYPHTLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELL 199 I +VGL KF D YPH LSGGM++RV++A+ P++LLMDEPF+ALD TR MQDELL Sbjct: 138 IRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELL 197 Query: 200 RLWDDTNFTVLFVTHSIEEAIRIGTRILLLSPHPGQVRAELNSIPPEEM---GTASQAQL 256 RLW + +V+FVTH +EEAI + ++ +L+ P A L S+ P ++ + + Sbjct: 198 RLWSAHSGSVVFVTHDLEEAIALADKVYVLTARP----ATLKSVYPIDLPRPRVMEEVRY 253 Query: 257 EQRINDM 263 EQR D+ Sbjct: 254 EQRFIDI 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 815,325 Number of extensions: 33159 Number of successful extensions: 446 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 315 Number of HSP's successfully gapped: 127 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)