BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0003.p
         (435 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311843|ref|YP_003775935.1| transmembrane sensor histidine ...   293   3e-80
gi|300311842|ref|YP_003775934.1| response regulator transcriptio...    87   2e-18

>gi|300311843|ref|YP_003775935.1| transmembrane sensor histidine
           kinase transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 468

 Score =  293 bits (749), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 141/189 (74%), Positives = 163/189 (86%), Gaps = 1/189 (0%)

Query: 59  DVPLAAFSMLTAGDQVFYVVIDPDGRTVAGDPDFKPTIPWNKLEDGPLLQDGAYLDTPVR 118
           DVPLAA SML  GD   Y V DP GR +AGD +F+P IPW +LE GPLL+DG YL TPVR
Sbjct: 74  DVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPWQELEQGPLLRDGQYLGTPVR 133

Query: 119 MAVIGRRMPVAGEHPWAVIVLAQTNNARMSFAKSVGTRALLVILAMGVLTVIAAMFTLYQ 178
           MA+IGRRMPV G HPWAVIVLAQTNNARMSFA+S+G+RAL+VI+AM VLT++AAMFTLYQ
Sbjct: 134 MAIIGRRMPVEGPHPWAVIVLAQTNNARMSFAQSLGSRALVVIVAMSVLTLVAAMFTLYQ 193

Query: 179 ALSPLKKIEAAIRQRDLNDLSPLSITVPVETHALVSSINAFMQRLAVHRATMRRVIGN-P 237
           AL+PLK+IEAAIR+RDLNDLSPL +TVP ETHALVS+INAFMQRLAVHR+TMRRVIG+  
Sbjct: 194 ALAPLKRIEAAIRERDLNDLSPLVLTVPAETHALVSAINAFMQRLAVHRSTMRRVIGDAA 253

Query: 238 HAARTRLSA 246
           H  RT ++A
Sbjct: 254 HQLRTPVTA 262



 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 59/67 (88%)

Query: 265 IVAGRSLYTRLVMRVGIVLTISSAVLLIAIWISTQLAANEAYDRILSGSALQIAENTWYQ 324
           ++AGRSLYTRLV+RVG VL +S+A LLIAIWISTQ AA EAYDRIL+GSALQIAENTWY 
Sbjct: 8   VIAGRSLYTRLVIRVGAVLLVSAAALLIAIWISTQFAAREAYDRILAGSALQIAENTWYD 67

Query: 325 NGAVNXN 331
           +G VN +
Sbjct: 68  HGEVNVD 74


>gi|300311842|ref|YP_003775934.1| response regulator transcription
          regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 48/54 (88%)

Query: 1  MRILLVEDTADVAEAIIAHLSRIGHTVDWQSKGNDAARLVTDPYDLLILDVMLP 54
          MRILLVEDTADVAEAI+ HL+RIGHTV+W+S G  A+R +++ YDLLILDVMLP
Sbjct: 1  MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRLSESYDLLILDVMLP 54


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,287,722
Number of extensions: 53108
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 3
Length of query: 435
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,203,190
Effective search space: 417506930
Effective search space used: 417506930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)