BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0001.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311437|ref|YP_003775529.1| signal transduction containing ...   121   4e-29

>gi|300311437|ref|YP_003775529.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  121 bits (303), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/123 (52%), Positives = 88/123 (71%)

Query: 1   VIEHAAELGLHNVIGSLVAFINVDAAILLSDAIFVLPKEHVILEILETVELTLPLMQRIE 60
           VI HA+ELGL NVIG+L  FINVDAA+L+SD I+ LP + V+LEILETV +T  L+ R+ 
Sbjct: 59  VIAHASELGLSNVIGNLQGFINVDAAVLMSDFIYFLPNDKVVLEILETVRVTPELVVRVR 118

Query: 61  ALSEAGYVFAIDDLVQESDRTDLLMRVAGIVKVDVLHMPDDELAALSHSLRQKGKKLLAE 120
            L +AGYVFA+DD+V ES   + L+ +  I+K+DV+ +   +L  LS   ++  K+LLAE
Sbjct: 119 ELVKAGYVFALDDVVAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAE 178

Query: 121 KXE 123
           K E
Sbjct: 179 KVE 181


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 408,712
Number of extensions: 11359
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)