BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0047.0018.p
         (114 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309702|ref|YP_003773794.1| translation initiation factor I...   133   4e-33
gi|300309477|ref|YP_003773569.1| translation initiation factor I...    96   1e-21

>gi|300309702|ref|YP_003773794.1| translation initiation factor IF-1
           protein [Herbaspirillum seropedicae SmR1]
          Length = 87

 Score =  133 bits (334), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 70/79 (88%)

Query: 28  MAKEELLEMNGLVEEVLPDSRFRVNLENGHRLIAYTSGKMRQNHIRILAGDKVTLELSPY 87
           MAKEEL+EM G V EVLPDSRFRV L+NGH LIAYT+G+M++N I+ILAGDKVTLELSPY
Sbjct: 1   MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 60

Query: 88  DLSKGRITFRHLEKRGPVG 106
           DL+KGRI FRHLE RGP G
Sbjct: 61  DLNKGRIIFRHLENRGPTG 79


>gi|300309477|ref|YP_003773569.1| translation initiation factor
          IF-1 [Herbaspirillum seropedicae SmR1]
          Length = 72

 Score = 95.5 bits (236), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 28 MAKEELLEMNGLVEEVLPDSRFRVNLENGHRLIAYTSGKMRQNHIRILAGDKVTLELSPY 87
          MAK+++++M G + E LP++ FRV LENGH ++ + SGKMR N+IRIL GDKVT+EL+PY
Sbjct: 1  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 60

Query: 88 DLSKGRITFR 97
          DLS+ RI FR
Sbjct: 61 DLSRARIVFR 70


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 254,887
Number of extensions: 8532
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 2
Length of query: 114
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 41
Effective length of database: 1,274,215
Effective search space: 52242815
Effective search space used: 52242815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)