BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0047.0015.p (289 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312573|ref|YP_003776665.1| dihydrodipicolinate synthase [H... 136 2e-33 gi|300310616|ref|YP_003774708.1| dihydrodipicolinate synthase/N-... 61 8e-11 gi|300310700|ref|YP_003774792.1| dihydrodipicolinate synthase/N-... 60 2e-10 >gi|300312573|ref|YP_003776665.1| dihydrodipicolinate synthase [Herbaspirillum seropedicae SmR1] Length = 292 Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 138/290 (47%), Gaps = 4/290 (1%) Query: 4 FDGIWIPLVTPFH-DGKIDFPALQALARSMFDAGVSGLVACGSTAEAAALDDGEQLAVLD 62 G + +VTP H DG +D+ L+ L G +V G+T E+ + E ++ Sbjct: 2 IKGSIVAIVTPMHQDGSLDYDGLRKLIDWHIAEGTDSIVIVGTTGESPTVSMEEHCELIK 61 Query: 63 -AILDAVPGCPVAMGLAGNRQAAMLEKMQKIQQRPVAGLLIPAPYYIRPSQEGLRAFFLT 121 A+ P+ G GN + +E + ++ L PYY RP+QEG+ F Sbjct: 62 VAVEHTAKRIPIIAGTGGNSTSEAIELTEFAKKVGADASLQVVPYYNRPTQEGMYLHFKK 121 Query: 122 MADAAEAPVIIYNIPYRSGINIDAATILALAGHERIVAVKDCGGNAAATMDLI--AHGGL 179 +A++ + PVI+YN+P R+ ++ TIL LA + IV VKD GN A DLI A Sbjct: 122 IAESVDLPVILYNVPGRTVADMSNETILRLAQVKGIVGVKDATGNIARGTDLIRLAPKSF 181 Query: 180 QIMAGEDEQIFTTLCLGGSGAITAAAHIRPDLFVRVAQLVRAQRLVEAREQFYDLLPLIR 239 + +G+D + GG+G I+ A++ P + + + A E LLPL Sbjct: 182 AVYSGDDATAIALMLYGGAGNISVTANVAPRDMHELCVAAMSGNIARAVELNNKLLPLHN 241 Query: 240 LLFAEPNPAVIKTALSMMGMLRDELRAPMQASSPALHERLRRELSRLGCL 289 LF EPNP +K A+ MG++ +R P+ A H+ +R L G L Sbjct: 242 KLFVEPNPVPLKWAMQEMGLIPSGMRLPLAPLGAAYHDTVRAALRESGVL 291 >gi|300310616|ref|YP_003774708.1| dihydrodipicolinate synthase/N-acetylneuraminate lyase [Herbaspirillum seropedicae SmR1] Length = 305 Score = 61.2 bits (147), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 27/283 (9%) Query: 12 VTPF-HDGKIDFPALQALARSM--FDAGVSGLVACGSTAEAAALDDGEQLAVLDAILDAV 68 VTPF DG +D A+ L + + FD GV GLV G E L EQ AV+++ + + Sbjct: 13 VTPFTRDGAVDHAAIMRLGKWLGSFD-GVKGLVVLGHAGEGTFLSQSEQAAVIESFVKST 71 Query: 69 PG-CPVAMGLA-GNRQAAMLEKMQKIQQRPVAGLLIPAPYYIR------PSQEGLRAFFL 120 G PV G+ Q A E + ++ AGL+ P+ ++R Q+ RA + Sbjct: 72 DGRVPVIAGITLEGTQVAAEEAKRAVKAGAAAGLVYPSHGWLRFGYQKGAPQDRYRAIY- 130 Query: 121 TMADAAEAPVIIYNIPYRSGINIDAATILALAGHERIVAVKDCGGNAAATMDLI-----A 175 + + P+I++ P + + T L +A + A+K+ N I Sbjct: 131 ---EESGLPLILFQYPDATKATYNLETQLDIAALPGVFAMKNGVRNMRRWDTEIPVVRRE 187 Query: 176 HGGLQIMAGEDEQIFTTLCLGGSGAITAAAHIRPDLFVRVAQLVRAQRLVEAREQFYDLL 235 LQI+ DE + T+ GA+ I P+L + + +A+ +AR LL Sbjct: 188 RPDLQILTCHDEYLLHTM-FDVDGALVGYGSIAPELLIDLIAAGKAKDYRKARAIHDKLL 246 Query: 236 PLIRLLFAE----PNPAVIKTALSMMGMLRD-ELRAPMQASSP 273 P+ + ++ +K AL G+L +R+P+ P Sbjct: 247 PVTKNVYHRGSHMEGTVALKHALVARGILEHATVRSPLLPLEP 289 >gi|300310700|ref|YP_003774792.1| dihydrodipicolinate synthase/N-acetylneuraminate lyase [Herbaspirillum seropedicae SmR1] Length = 306 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 14/279 (5%) Query: 17 DGKIDFPALQALARSMFDAGVSGLVACGSTAEAAALDDGEQLAVLDAILDAVPG-CPVAM 75 +GK+D + M DAG +GL + +E L D E++ V + +L+ V G PV + Sbjct: 20 NGKLDLEGQKRAIDFMIDAGSNGLCILANFSEQFVLSDEERVQVQNTVLEHVAGRVPVIV 79 Query: 76 GLAGNRQAAMLEKMQKIQQRPVAGLLIPAPYY---IRPSQEGLRAFFLTMADAAEAPVII 132 E+ + Q A +++ PY+ R ++ + F+ ++DA + P++I Sbjct: 80 TTTHYGSQICAERSRAAQDAGAAMVMVMPPYHGATFRVPEKQIYEFYKHVSDAIDIPIMI 139 Query: 133 YNIPYRSGINIDAATILALAGH-ERIVAVK-DCGGNAAATMDLIAHGGLQIMAGEDEQIF 190 + P +G + A + +A E++ K + G A+ DLI GG ++ D + Sbjct: 140 QDAPV-AGTPLSAPFLARMAKEIEQVSYFKIETAGAASKLRDLIELGGDAVVGPWDGEEA 198 Query: 191 TTLC--LGGSGAITAAAHIRPDLFVRVAQLVRAQRLVEAREQFYDLLPLIRLLFAEPNPA 248 TL L PD ++ A + +A E + LPLI + + Sbjct: 199 ITLIPDLDAGATGAMTGGGYPDGIRKIVDAYFAGDIEKAAELYMQWLPLINYENRQCGLS 258 Query: 249 VIKTALSMMGMLR-DELRAPMQASSPALHERLRRELSRL 286 K + G+++ D LR P P LH ++R L R+ Sbjct: 259 ACKALMLEGGVIKSDMLRHP----QPPLHPKVREGLLRV 293 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 902,731 Number of extensions: 39290 Number of successful extensions: 192 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 3 Length of query: 289 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 205 Effective length of database: 1,222,130 Effective search space: 250536650 Effective search space used: 250536650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)