BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0047.0012.p
         (630 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313994|ref|YP_003778086.1| hypothetical protein Hsero_4712...   403   e-113
gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum serope...   111   2e-25
gi|300309898|ref|YP_003773990.1| major facilitator superfamily p...    84   3e-17

>gi|300313994|ref|YP_003778086.1| hypothetical protein Hsero_4712
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  403 bits (1035), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 184/271 (67%), Positives = 224/271 (82%)

Query: 318 TQQQYQPRWRIADLDFSRIDLQRVRDDENTFYLVTCASFVESGSDLYTHNLVDFFRDNAE 377
           + +Q +  W I D+DFSRIDL RVR DE+ FYLV CASFVESGSDLYTHNLV++++ +AE
Sbjct: 3   SSRQEKQHWTIEDIDFSRIDLARVRQDEDLFYLVACASFVESGSDLYTHNLVEYYKGDAE 62

Query: 378 VAAWLREQWEVEELQHGAALRAYVEHVWPEFDWQQAYDGFLAEYAGYCKVELLEPTKALE 437
           V  WLREQWE EELQHGAALRAYVEHVWPEFDWQ+AY GFL EY+ YCKVELLEPT+A E
Sbjct: 63  VETWLREQWEQEELQHGAALRAYVEHVWPEFDWQRAYQGFLDEYSQYCKVELLEPTRAQE 122

Query: 438 MAARCVVETGTATYYRALSRSVQEPVLQELAARISHDEVNHYKHFYKYFRQYSRSEGISR 497
           +AARCVVETGT+TYYRAL+R+  EPVL++LA  I++DEVNHYKHFY YFR+Y R E I R
Sbjct: 123 LAARCVVETGTSTYYRALARATDEPVLKQLAGLIANDEVNHYKHFYHYFRRYRREENIGR 182

Query: 498 SRVLGTLGRRTLEMRNEDADCAIRHALKFREPLRAGDPAYLRQLSARMNAIVRTNLTPDM 557
           SRV GTL RRTLE++NEDADCAIRH     +P  A DPA L++L++RM+  VR NL P+ 
Sbjct: 183 SRVFGTLSRRTLELKNEDADCAIRHVAMVYKPELAADPARLKELASRMSRTVRVNLKPET 242

Query: 558 TLKMIMRPLELPPKVQSWVQYPIRQLMQYVF 588
           T+KMIMRPLELP ++Q+ +++P+RQ MQ+V 
Sbjct: 243 TIKMIMRPLELPIRLQNMIEFPLRQFMQHVL 273


>gi|300309383|ref|YP_003773475.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 412

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 113/197 (57%)

Query: 7   AIGLIAMLPLLGYTCGQFLIVPLSDLHENRRLIVRLLAGCAACLGVAMFSTHTWLFLTAI 66
           A+G++ M   LGY  G  L+ PL D ++ RR+I+   A   A L +A  ++     L A 
Sbjct: 62  AVGMVPMSTQLGYALGILLLAPLGDRYDRRRIILIKAAILTAALLLAGAASGVGALLAAS 121

Query: 67  FLAGVLSSAIQMLVPMAAFMSEETHRGRVIGNVMSGLMLGIMLSRPMAGWLASVAGWRAV 126
              G+ ++  Q +VP AA ++ E  RGRV+G VM+GL+LGI+LSR ++G++A   GWRA+
Sbjct: 122 LAVGLTATLAQDIVPAAASLAPEQSRGRVVGTVMTGLLLGILLSRVVSGFVAEHFGWRAM 181

Query: 127 YGLLALIVAMLALVLGRVLPERHPQQTPRYRDILASLWQLLRSEPVLQYGALTGALGMAA 186
           +   A+ +A++ L   R LP  HP     Y  ++ASL  L +    L+  AL   L    
Sbjct: 182 FVAAAVSIALIGLAAWRGLPRFHPTTHLSYGALMASLATLFKKHGALRRAALAQGLLSVG 241

Query: 187 YMSYWTTIALLLVQEPF 203
           + ++W+T+A++L   PF
Sbjct: 242 FSAFWSTLAVMLHGAPF 258


>gi|300309898|ref|YP_003773990.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 392

 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 98/183 (53%), Gaps = 3/183 (1%)

Query: 40  VRLLAGCAACLGVAMFSTHTWLFLTAIFLAGVLSSAI-QMLVPMAAFMSEETHRGRVIGN 98
           ++LLA   A + V + +  +++ L  +   G+L +A+ Q L+  AA  + E  RGRV+G 
Sbjct: 81  IQLLALVCALVTVGL-ARSSYVLLAGMLAVGLLGTAMTQGLIAYAASAAGEDERGRVVGA 139

Query: 99  VMSGLMLGIMLSRPMAGWLASVAGWRAVYGLLALIVAMLALVLGRVLPERHPQQTP-RYR 157
             SG+ +G++LSR  +G ++ V GWR VY   A+++  LA  L + LP    Q    RY 
Sbjct: 140 AQSGVFIGLLLSRVFSGAVSDVTGWRGVYLCAAIMMLCLAWPLWKRLPAIPVQADGLRYL 199

Query: 158 DILASLWQLLRSEPVLQYGALTGALGMAAYMSYWTTIALLLVQEPFSLGAGGIAVFALVG 217
            ++ S+W LLR + VLQ   +   L  AA+  +W+ + L L   P+      I  F LVG
Sbjct: 200 TLIKSMWCLLRDDKVLQVRGVLAMLMFAAFNVFWSALVLPLSASPYHFSHTVIGAFGLVG 259

Query: 218 AXG 220
             G
Sbjct: 260 VIG 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,756,142
Number of extensions: 65817
Number of successful extensions: 326
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 3
Length of query: 630
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 539
Effective length of database: 1,188,985
Effective search space: 640862915
Effective search space used: 640862915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)