BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0047.0010.p (912 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313996|ref|YP_003778088.1| urea ABC transporter permease [... 850 0.0 gi|300313997|ref|YP_003778089.1| urea transport system, permease... 656 0.0 gi|300311945|ref|YP_003776037.1| branched-chain amino acid ABC t... 232 1e-61 gi|300311946|ref|YP_003776038.1| branched-chain amino acid ABC t... 209 1e-54 gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 128 2e-30 >gi|300313996|ref|YP_003778088.1| urea ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 538 Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/494 (87%), Positives = 459/494 (92%), Gaps = 1/494 (0%) Query: 12 LLTGWLCTQAISAHAAIDPALLKPLAGDDPDARIAAVTQIAALANADAQKILNAINSDAL 71 LL WLC A++A AAIDPALLKPL GDDPDARI AV QIAALAN DA KILNA+NSDAL Sbjct: 11 LLATWLCVHALAASAAIDPALLKPLGGDDPDARIDAVNQIAALANDDALKILNALNSDAL 70 Query: 72 YATPAGDVLIIEDS-DAFNPATDKTGPAPDDAEGITINNRLRGVVEGALSGLKLFSPDRA 130 Y TPAGDVLI++++ AFNPATDK+GPAPDDAEGIT+NNRLRG V+GALSGLKL SP R Sbjct: 71 YVTPAGDVLIVDEAGQAFNPATDKSGPAPDDAEGITVNNRLRGAVDGALSGLKLLSPQRE 130 Query: 131 TRLTAATELLKTADAAQTPLISKALAAEKDPQIQEVLKQVVATANLHAPDAAARKAAVKA 190 RL AA ELLK AD AQ PLI KALA E D QI++VL+QV ATANLH+PD AAR+AAVK Sbjct: 131 QRLAAANELLKNADPAQIPLIVKALAKESDAQIKDVLQQVQATANLHSPDPAARRAAVKT 190 Query: 191 LAETTNANLKPVLEQMLAKNPDGSYVETDEGVRIEAVRTLSALDRHLSITEFVGKLFYGV 250 LA+TTNA+LKP LE MLAK+PDGSYVE DEGVR+EAVRTL+ALDRHL+I +F GKLFYGV Sbjct: 191 LADTTNASLKPALENMLAKHPDGSYVEPDEGVRVEAVRTLAALDRHLAIVDFAGKLFYGV 250 Query: 251 SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYIVVA 310 SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAY+VVA Sbjct: 251 SLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYLVVA 310 Query: 311 LPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFGAQNVEVANPS 370 LPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFGAQNVEVANPS Sbjct: 311 LPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFGAQNVEVANPS 370 Query: 371 WMSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGV 430 WMSGG+TVLGSLVLSYNRIVI+FFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGV Sbjct: 371 WMSGGVTVLGSLVLSYNRIVIVFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGV 430 Query: 431 STGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIA 490 STGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIA Sbjct: 431 STGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIA 490 Query: 491 AFGLGEVNKFLEPV 504 AFGLGEVNKFLEP+ Sbjct: 491 AFGLGEVNKFLEPM 504 >gi|300313997|ref|YP_003778089.1| urea transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 376 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/378 (87%), Positives = 354/378 (93%), Gaps = 9/378 (2%) Query: 542 MSTLNLPLKPSLFSRPAWIGIVVFTVILGLLPILNLIFPASHPLSISSYTIALIGKFMCY 601 MST+ ++PSLF+RPAW GIV+ T++L LLP+ NL+FPA L +SSYT+AL+GKFMCY Sbjct: 1 MSTM--IMRPSLFNRPAWTGIVICTIVLALLPVCNLLFPAGSALHVSSYTVALVGKFMCY 58 Query: 602 AMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSNLPDFMVFLNWK 661 AMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQS+LPDFMVFLNWK Sbjct: 59 AMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRAIGRDGVYQSDLPDFMVFLNWK 118 Query: 662 AYPWYWWMTEHFWFAMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFF 721 AYPWYWWMT+HFWFAMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFF Sbjct: 119 AYPWYWWMTDHFWFAMLLVVLVPGLLAFVFGYFAFRSRIKGVYFSIITQAMTFAFMLLFF 178 Query: 722 RNDTGFGGNNGFTDFKRILGFTITAPSTKAVLYLVTLAFLLGSLLLCRAIVTSKLGRVLQ 781 RNDTGFGGNNGFTDFKRILGFTITAP+TKAVLYLVTL L G+L+LCR IVTSKLGRVLQ Sbjct: 179 RNDTGFGGNNGFTDFKRILGFTITAPATKAVLYLVTLGLLFGALVLCRMIVTSKLGRVLQ 238 Query: 782 GVRDSESRLMFIGYNPLWFKLFVWTLSAVLCGIAGALYVPQVGIINPSEMSPANSIEMVI 841 GVRDSESRLMFIGYNPLWFKLFVWTLSAV+CGIAGALYVPQVGIINPSEMSPANSIEMVI Sbjct: 239 GVRDSESRLMFIGYNPLWFKLFVWTLSAVICGIAGALYVPQVGIINPSEMSPANSIEMVI 298 Query: 842 WAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLIKK 901 WAAVGGRG+L+GPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGL++K Sbjct: 299 WAAVGGRGTLIGPIIGAFTVNGLKSWFTAAFPDLWLYALGLIFILVTLFLPQGILGLVQK 358 Query: 902 LKKQD-------PAKEAA 912 KK+D +KEAA Sbjct: 359 FKKRDAVAAEGSASKEAA 376 >gi|300311945|ref|YP_003776037.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 401 Score = 232 bits (591), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 139/340 (40%), Positives = 193/340 (56%), Gaps = 12/340 (3%) Query: 584 PLSISSYTIALIGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLM----R 639 PL++ + + L+GK++ YA A+ L L WGY GILSLG GVFF LGGY M+L Sbjct: 30 PLTLDMFRLNLVGKYLSYAFVAVGLVLCWGYGGILSLGQGVFFGLGGYCMAMFLKLEASD 89 Query: 640 AIGRDGVYQSNLPDFMVFLNWKAYPWYWWMTEHFWFAMLLVVLVPGLLAFVFGYFAFRSR 699 I +PDFM + A P W F F + V+ VP +LA + G F+ R Sbjct: 90 PISTKIQSTPGIPDFMDWNQITALPAMWEPFHSFAFTIFAVLAVPTVLAMLIGMAMFKRR 149 Query: 700 IKGVYFSIITQAMTFAFMLLFFRNDTGFGGNNGFTDFKRILGFTITAPSTKAVLYLVTLA 759 + VYFSI+TQA+ +L GG NG TD K ++G+ I K VLY V Sbjct: 150 VGDVYFSIVTQAIAAILSILIIGQQGLTGGVNGITDLKTLMGWDIRTDHAKLVLYFVNAG 209 Query: 760 FLLGSLLLCRAIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVLCGIAGALY 819 L G +L R ++ SKLGR+L +RD E R+ F GY+ FK+FV+ +A+ I GA++ Sbjct: 210 LLFGCILFGRYVLGSKLGRLLVAMRDKEERVRFSGYDVASFKVFVFCAAAMFSAIGGAMF 269 Query: 820 VPQVGIINPSEMSPANSIEMVIWAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLWLYA 879 QVG ++PS + SIEMVI+AAVGGR SLLG + G VN K++F+ FP+LWL+ Sbjct: 270 TLQVGFMSPSFVGIVPSIEMVIFAAVGGRMSLLGAVYGTLLVNFGKTYFSETFPELWLFL 329 Query: 880 LGLIFILVTLFLPQGILG--------LIKKLKKQDPAKEA 911 +G +FI V ++ P G+ G L+ KL+ + AK A Sbjct: 330 MGGLFIAVVMYFPNGLAGLWQTQGKRLMGKLRGEPNAKAA 369 >gi|300311946|ref|YP_003776038.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 209 bits (531), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 115/256 (44%), Positives = 157/256 (61%) Query: 247 FYGVSLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAY 306 F G+S+ VLLL ALGLAI FG MG+INMAHGE L IGAY TY+ + + P Y Sbjct: 4 FNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQPFY 63 Query: 307 IVVALPAAFIVAAAVGIALERLVIRWLYGRPLETLLCTWGISLMLMQGVRSIFGAQNVEV 366 VA+ +F VA VG E L+I LY RPL+TLL TWG+SL + Q RSIFGA+ V Sbjct: 64 FFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKEVSA 123 Query: 367 ANPSWMSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMAD 426 P W+ G + + N + ++ + + A++++L ++R GL VRA QNR M+ Sbjct: 124 TLPDWLMGSFKPTDDIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRVMSG 183 Query: 427 CVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAG 486 VG++T K+D TF LGCG+AG+ G A + +G+ GP G YIVD+F+VVV GG L G Sbjct: 184 AVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQSLIG 243 Query: 487 TVIAAFGLGEVNKFLE 502 T+ +AF + + E Sbjct: 244 TIASAFSIAQTQSTAE 259 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 10/247 (4%) Query: 253 GSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPGAIDAYIVVALP 312 GS + +LGLA+ FGL+ +IN AHG L M+GA+ ++ + V L Sbjct: 22 GSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGL--------SYLGLNYWVMLI 73 Query: 313 AAFIVAAAVGIALERLVIRWLYG-RPLETLLCTWGISLMLMQGVRSIFGAQNVEVANPSW 371 A I+ A GI +E+ ++RWLY L LL T+GI+LM+ RSI+G + P Sbjct: 74 VAPILVGAFGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPYSVPDL 133 Query: 372 MSGGITVLGSLVLSYNRIVIIFFALFVVFAVWLILNKTRLGLFVRAVTQNRRMADCVGVS 431 + G T LG +VL R ++ +L V FA W ++ KTRLG ++RA T+N ++ + G++ Sbjct: 134 LQGA-TNLGFMVLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGTENPKLVEAFGIN 192 Query: 432 TGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAA 491 + +T+G G +A GV + + V P +G I+ F VVV+GG+G + G++I Sbjct: 193 VPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITG 252 Query: 492 FGLGEVN 498 LG + Sbjct: 253 LVLGLIE 259 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,515,276 Number of extensions: 100354 Number of successful extensions: 596 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 563 Number of HSP's successfully gapped: 40 Length of query: 912 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 818 Effective length of database: 1,174,780 Effective search space: 960970040 Effective search space used: 960970040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 135 (56.6 bits)