BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0047.0009.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313998|ref|YP_003778090.1| urea transport system, ATPase c... 349 1e-97 gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC t... 148 5e-37 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 82 3e-17 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 81 7e-17 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 79 4e-16 >gi|300313998|ref|YP_003778090.1| urea transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 289 Score = 349 bits (896), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 164/179 (91%), Positives = 173/179 (96%) Query: 20 ADHGTSYARIKQDGLDTSHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAG 79 ADHGTSY RIK +G+DT+HGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAG Sbjct: 25 ADHGTSYERIKPEGVDTTHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAG 84 Query: 80 KTTMMDVITGKTRPTAGTAFFGQTIDLTRMTEYEIAHAGIGRKFQRPTVFEQHSVFENLE 139 KTTMMDVITGKTRPT+GTAFFGQTIDLT+MTEYEIAHAGIGRKFQRPTVFEQH+VFENLE Sbjct: 85 KTTMMDVITGKTRPTSGTAFFGQTIDLTKMTEYEIAHAGIGRKFQRPTVFEQHTVFENLE 144 Query: 140 MAMKMDKRVKTTLFARLNSEQVGKIEEILKLIRLNGQENRVAGLLSHGQKQWLEXAGLL 198 +AMKMDKRVKTTLFARL+SEQ+GKIEEILKLIRLNGQE RVAGLLSHGQKQWLE LL Sbjct: 145 LAMKMDKRVKTTLFARLSSEQIGKIEEILKLIRLNGQEQRVAGLLSHGQKQWLEIGMLL 203 >gi|300311944|ref|YP_003776036.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 148 bits (373), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 78/166 (46%), Positives = 112/166 (67%), Gaps = 1/166 (0%) Query: 33 GLDTSHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTR 92 G ++ +L +E++TVSFDGFKA++ LNL + E+R +IGPNGAGKTT++D+I GKTR Sbjct: 7 GFESDAHPVLAIEDLTVSFDGFKAVDKLNLYVQRNEVRVVIGPNGAGKTTVLDLICGKTR 66 Query: 93 PTAGTAFFGQTIDLTRMTEYEIAHAGIGRKFQRPTVFEQHSVFENLEMAMKMDKRVKTTL 152 T+G+ F +LT+M+E+ I G+GRKFQ P+++E SVFENLEM+ ++V L Sbjct: 67 ATSGSIKFNNH-ELTKMSEHAIVRVGVGRKFQTPSIYENLSVFENLEMSFPRGRKVFGAL 125 Query: 153 FARLNSEQVGKIEEILKLIRLNGQENRVAGLLSHGQKQWLEXAGLL 198 + + + V ++E + I L Q + A LLSHGQKQWLE LL Sbjct: 126 TFKRSPDVVARVEAVAAEIFLEEQLHTQADLLSHGQKQWLEIGMLL 171 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 7/164 (4%) Query: 40 AILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTAGTAF 99 IL N+T F GF A++ +NL I G + +IGPNGAGKTT +++T PT+G Sbjct: 4 VILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQIL 63 Query: 100 FGQTIDLTRMTEYEIAHAGIGRKFQRPTVFEQHSVFENLEMAMKMDKRVKTTLFARLNSE 159 F D+T +IA GI R FQ VF SV EN+ + ++ +++ T+ N E Sbjct: 64 FNGR-DITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQ--RKLGTSFHFWKNGE 120 Query: 160 QVGKIEE----ILKLIRLNGQENRVAGLLSHGQKQWLEXAGLLS 199 + +++E +L+ + L + L +G+K+ LE A L+ Sbjct: 121 SLKQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLA 164 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 81.3 bits (199), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 92/162 (56%), Gaps = 8/162 (4%) Query: 41 ILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTAGTAFF 100 +L L +I+ +F G + + +N ++ GE+ +IGPNGAGKTT+ ++ITG R ++G+ F Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 101 GQTIDLTRMTEYEIAHAGIGRKFQRPTVFEQHSVFENLEMAM--KMDKRVKTTL-----F 153 D+ + ++I GI R FQ VF++ ++ EN+ + M ++ V + L F Sbjct: 62 NDD-DIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGF 120 Query: 154 ARLNSEQVGKIEEILKLIRLNGQENRVAGLLSHGQKQWLEXA 195 E + E+L +RL+ + + +A LS+G+++ LE A Sbjct: 121 RNAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFA 162 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 79.0 bits (193), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 10/170 (5%) Query: 34 LDTSHGAILYLENITVSFDGFKAINNLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRP 93 ++ S +L + N+++ F G A++ ++L + E+ IIGPNGAGKTT+ + I+G RP Sbjct: 1 MNASVKTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRP 60 Query: 94 TAGTAFF-GQTIDLTRMTEYEIAHAGIGRKFQRPTVFEQHSVFENLEMAMK-------MD 145 T+G G +I R +++A G+ R FQ +F+ +V ENL +A + Sbjct: 61 TSGEIMLDGASI--ARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLS 118 Query: 146 KRVKTTLFARLNSEQVGKIEEILKLIRLNGQENRVAGLLSHGQKQWLEXA 195 +KT + + E + + L + L NR AG LS+G ++ +E A Sbjct: 119 GLLKTPAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIA 168 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.131 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 746,736 Number of extensions: 28878 Number of successful extensions: 290 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 282 Number of HSP's successfully gapped: 44 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)