BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0047.0007.p
         (298 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314000|ref|YP_003778092.1| urease accessory UreD protein [...   379   e-106

>gi|300314000|ref|YP_003778092.1| urease accessory UreD protein
           [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  379 bits (973), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/282 (65%), Positives = 218/282 (77%), Gaps = 2/282 (0%)

Query: 17  NVPAANRHEKARLTLGFADDAGTTRMIERSHFGPLRVQKPLYPEHPAVCHAVIVHPPGGI 76
             P  +  ++ARL LGFADD GTTR++ R HFGPLRVQKPLYPE P++CHA+IVHPPGGI
Sbjct: 8   GAPLRHAPDQARLALGFADDKGTTRLMRRQHFGPLRVQKPLYPEDPSICHAIIVHPPGGI 67

Query: 77  LGGDVLNISARVGDNAHALLTTPGAGKWYRANGFVSQQQVSLTATAGAALEWLPQETIFF 136
           +GGD L+I+A  G+ AHALLTTPGAGKWYRANG  S+Q V L A AGA LEWLPQETIFF
Sbjct: 68  VGGDQLSITAEAGERAHALLTTPGAGKWYRANGQSSRQAVRLDAAAGATLEWLPQETIFF 127

Query: 137 NDADVRMEHSVDLAADACYIGGEILCFGRTASGESFNSGRVSQCTSIRRGGKLVWFEQGT 196
           + A+VRMEH V LAA+A Y+G EILCFGRTASGE+FN+G +SQ TSIRRGGKLVWFEQG 
Sbjct: 128 DGAEVRMEHEVTLAANAAYLGAEILCFGRTASGETFNTGAISQRTSIRRGGKLVWFEQGR 187

Query: 197 LRAGTSSMTSPLALAGFTVSATLIAVGLPINAAFLSELREQTGALTRDSNDRTGATQMKQ 256
           L+A   +M  PLAL G T+  TLIAVG  ++AA L  LRE  GAL  +   R+GAT MKQ
Sbjct: 188 LQAEAGAMQGPLALDGQTICGTLIAVGDGMDAALLGHLRETIGALQLEG--RSGATLMKQ 245

Query: 257 VLVLRYLGNSSQAARQWLTHAWQRIRPELMQREAIVPRIWNT 298
           VL+ RY+G SS  ARQWL  AW  +RP +  +EA +PRIWNT
Sbjct: 246 VLIARYMGQSSLVARQWLHAAWHVLRPAVTGKEAAIPRIWNT 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,015,528
Number of extensions: 43605
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,217,395
Effective search space: 259305135
Effective search space used: 259305135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)