BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0047.0003.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314004|ref|YP_003778096.1| urease accessory UreE protein [...   251   1e-68

>gi|300314004|ref|YP_003778096.1| urease accessory UreE protein
           [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score =  251 bits (642), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/174 (81%), Positives = 149/174 (85%), Gaps = 5/174 (2%)

Query: 1   MLTLNTKIEHAEKIDGELLLPYDQREKSRLRATLLSGEDVAVFTVRGTVLRNGDLLRGDD 60
           MLTLNTKI  AE+IDGEL LPYDQREKSRLRATL SGEDVAVFTVRGTVLR+GDLLRGDD
Sbjct: 1   MLTLNTKIAQAERIDGELELPYDQREKSRLRATLRSGEDVAVFTVRGTVLRDGDLLRGDD 60

Query: 61  GRVVKINAAKEATYRVEAASPHQLLRCAFHLGNRHTQAQVGE----GFLRIRKDPVLKEM 116
           GRVVKI A  EATYRV+AA  H LLRCAFHLGNRHTQA VG+    GFLRIRKDPVLKEM
Sbjct: 61  GRVVKIVAKAEATYRVDAADAHLLLRCAFHLGNRHTQAHVGQEGGVGFLRIRKDPVLKEM 120

Query: 117 LEGLGALVIEEEAAFEPESGAY-GGGHHHHGDDHHHPLAPIPVRQKIHRPGDKS 169
           LEGLGA V EE AAFEPE+GAY GG HHH  D HH+PLAPIP+RQKIHRP DK 
Sbjct: 121 LEGLGARVTEELAAFEPEAGAYGGGHHHHGDDHHHNPLAPIPLRQKIHRPSDKK 174


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 483,282
Number of extensions: 18151
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)