BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0037.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310970|ref|YP_003775062.1| drug/metabolite transporter (DM...   242   2e-65

>gi|300310970|ref|YP_003775062.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score =  242 bits (618), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 132/170 (77%), Positives = 152/170 (89%), Gaps = 1/170 (0%)

Query: 1   MLLKLVPLAFVLIWSTGFIVAKFGLPYAPPLTFLILRFAGVLMVLVPLVLILRAPWPRGR 60
           +L+ LVPL FVLIWSTGFIVAKFGLPYAPPLTFL+LRF GVL+VL+PLVL+ RAPWP GR
Sbjct: 14  LLMSLVPLLFVLIWSTGFIVAKFGLPYAPPLTFLLLRFTGVLLVLLPLVLLFRAPWPHGR 73

Query: 61  QVAHISVAGVLLHAGYLAGVWSAIKMGMPAGLTALIVGMQPVLTAFAAPFVGERVKGRQW 120
            + H++VAGVLL AGYLAGVW AIK+GMPAGL+ALIVG+QP+LTAFAAP +GE V+GRQW
Sbjct: 74  -IRHVAVAGVLLQAGYLAGVWCAIKIGMPAGLSALIVGLQPILTAFAAPLLGESVRGRQW 132

Query: 121 LGLGLGLCGVGLVVANKISLIGLSWEAISLCLVALVAITIGTLYQKRFXA 170
           LGL LGLCGVGLVVANKISLIGLS  +I+LC+ AL+ IT GTLYQKR+ A
Sbjct: 133 LGLALGLCGVGLVVANKISLIGLSTASIALCVFALLCITAGTLYQKRYCA 182



 Score = 78.2 bits (191), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 7/86 (8%)

Query: 137 KISLIGLSWEAISLCLVALVAITIGTLY-------QKRFXAVTGLLYLTPPTTAVMAWLM 189
           ++S +  + + I   L +++A++IG ++       +    +VT LLYLTPPTTAVMAWLM
Sbjct: 214 RLSNVAWTPQFIGALLWSVLALSIGAIFLLFALIRRSAATSVTSLLYLTPPTTAVMAWLM 273

Query: 190 FGEVFSLVGVIGMVVAVIGVAFVVRK 215
           FGE FSL+G +GM+V VIGVAFVVRK
Sbjct: 274 FGEAFSLIGALGMLVGVIGVAFVVRK 299


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.146    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 567,707
Number of extensions: 19858
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)