BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0027.p
         (109 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte...   140   2e-35
gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte...    87   3e-19
gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A...    75   1e-15
gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate A...    72   1e-14

>gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score =  140 bits (354), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/72 (94%), Positives = 70/72 (97%)

Query: 35  EKRLQAQGVEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVYTAYEIPT 94
           EKRLQ  GVEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVYTAYEIPT
Sbjct: 66  EKRLQPLGVEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVYTAYEIPT 125

Query: 95  PDAEGLLVKKDS 106
           PDAEGLLV+K+S
Sbjct: 126 PDAEGLLVQKNS 137


>gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 87.0 bits (214), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 49/74 (66%)

Query: 35  EKRLQAQGVEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVYTAYEIPT 94
           E+RL   G  VKW EF+AGP  LEAL  GS+DFG VGEAPP+FAQAAG   VY    +P 
Sbjct: 72  EQRLAPLGATVKWVEFSAGPVQLEALGAGSIDFGDVGEAPPIFAQAAGTPLVYVGATVPR 131

Query: 95  PDAEGLLVKKDSXF 108
           P  E +LVK DS  
Sbjct: 132 PYVEAVLVKDDSEL 145


>gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 323

 Score = 75.1 bits (183), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 46/72 (63%)

Query: 35  EKRLQAQGVEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVYTAYEIPT 94
           E+ LQ QG  VKW EFAAGPQL EALN  ++D G+  + P VFA A+G + VY   E P 
Sbjct: 57  EQALQPQGWSVKWFEFAAGPQLTEALNANAIDLGHAADTPSVFANASGVNAVYLGAEQPY 116

Query: 95  PDAEGLLVKKDS 106
           P   G+ V ++S
Sbjct: 117 PKGIGIFVAQES 128


>gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score = 71.6 bits (174), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 35  EKRLQAQGVEVKWAEFAAGPQLLEALNVGSVDFGY-VGEAPPVFAQAAGADFVYTAYEIP 93
           EK L   G ++ W EFA+G  LLEALNVG VD    V +  PVFAQAAGA   Y A E P
Sbjct: 60  EKLLAPTGAKISWHEFASGLPLLEALNVGGVDLSADVADTVPVFAQAAGAKLAYVAQESP 119

Query: 94  TPDAEGLLVKKDS 106
           +P A+ ++V+ DS
Sbjct: 120 SPAAQAIVVRADS 132


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 337,502
Number of extensions: 12344
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 4
Length of query: 109
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 37
Effective length of database: 1,278,950
Effective search space: 47321150
Effective search space used: 47321150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)