BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0026.p
         (276 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310978|ref|YP_003775070.1| alkanesulfonate monooxygenase [...   340   7e-95
gi|300310902|ref|YP_003774994.1| alkanesulfonate monooxygenase [...   268   4e-73
gi|300310284|ref|YP_003774376.1| coenzyme F420-dependent N5,N10-...    69   4e-13

>gi|300310978|ref|YP_003775070.1| alkanesulfonate monooxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 388

 Score =  340 bits (872), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 179/203 (88%), Positives = 188/203 (92%)

Query: 23  RLLVNVVTGGDPAEQESDGIFGTHKERYEISDEFLKIWRDVLGKTHTGGETNFEGKHLSV 82
           RLL+NVVTGGDP EQESDG+FG+H ERYEISDEFLKIWRDVL KT +G  T+F+GKHLSV
Sbjct: 100 RLLINVVTGGDPVEQESDGVFGSHAERYEISDEFLKIWRDVLTKTRSGEPTHFQGKHLSV 159

Query: 83  KGAKALYPPVQAPYPPLYFGGSSDEAIDLAAEQVDVYLTWGEPPAAVAEKIATVRARAAK 142
           KGAKALYPPVQ PYPPLYFGGSSDEAIDLAAEQVDVYLTWGEPPAAVAEKIA VR RAAK
Sbjct: 160 KGAKALYPPVQQPYPPLYFGGSSDEAIDLAAEQVDVYLTWGEPPAAVAEKIARVRERAAK 219

Query: 143 AGRTLRFGIRLHVIVRETTEAAWRAADELISKLDDDTIEKAQKTFARMDSEGQRRMAALH 202
           AGRTLRFGIRLHVIVRET EAAWRAADELIS+LDD+TI KAQ  FARMDSEGQRRMAALH
Sbjct: 220 AGRTLRFGIRLHVIVRETNEAAWRAADELISRLDDETIAKAQANFARMDSEGQRRMAALH 279

Query: 203 GGKRDKLEVSPNLWAGVGLXRLG 225
           GG+RDKLEVSPNLWAGVGL R G
Sbjct: 280 GGRRDKLEVSPNLWAGVGLVRGG 302


>gi|300310902|ref|YP_003774994.1| alkanesulfonate monooxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  268 bits (684), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 130/203 (64%), Positives = 155/203 (76%), Gaps = 4/203 (1%)

Query: 23  RLLVNVVTGGDPAEQESDGIFGTHKERYEISDEFLKIWRDVLGKTHTGGETNFEGKHLSV 82
           RLL+NVV GGD  E E+DG+F  H ERYE +DE+L IWR +L     G   N+EGKH  +
Sbjct: 102 RLLLNVVPGGDATELEADGVFLKHDERYEAADEYLTIWRKLL----QGETVNYEGKHFRI 157

Query: 83  KGAKALYPPVQAPYPPLYFGGSSDEAIDLAAEQVDVYLTWGEPPAAVAEKIATVRARAAK 142
           +  +  +P VQ PYPPLYFGGSS  A DLAA+ VD YLTWGEPPAAV +KI  VR RAA+
Sbjct: 158 RNGQLFHPAVQQPYPPLYFGGSSPAAHDLAAKHVDAYLTWGEPPAAVRQKIDDVRERAAR 217

Query: 143 AGRTLRFGIRLHVIVRETTEAAWRAADELISKLDDDTIEKAQKTFARMDSEGQRRMAALH 202
            GRT+RFG+RLH IVRETT  AW AA+ LISKL D+ I +AQ+ +ARMDS GQ+RMAALH
Sbjct: 218 QGRTVRFGVRLHAIVRETTAEAWTAAERLISKLTDEDIARAQQNYARMDSVGQQRMAALH 277

Query: 203 GGKRDKLEVSPNLWAGVGLXRLG 225
           GG+RDKLE++PNLWAGVGL R G
Sbjct: 278 GGRRDKLEIAPNLWAGVGLVRGG 300


>gi|300310284|ref|YP_003774376.1| coenzyme F420-dependent
           N5,N10-methylene tetrahydromethanopterin reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 5/151 (3%)

Query: 23  RLLVNVVTGGDPAEQESDGI-FGTHKERYEISDEFLKIWRDVLGKTHTGGETNFEGKHLS 81
           R+ +NVV+G    E ++ G  +  H ERY  S+EF++  + +     T  +  F+G    
Sbjct: 123 RIAINVVSGWFKGEFQAIGEPWLEHDERYRRSNEFIRALKGIW----TQDDFTFKGDFYR 178

Query: 82  VKGAKALYPPVQAPYPPLYFGGSSDEAIDLAAEQVDVYLTWGEPPAAVAEKIATVRARAA 141
                    PVQ P+P ++ GGSS  A D AA   D Y T G     +  +I  ++A+AA
Sbjct: 179 FNNYTLSPKPVQKPHPEIFQGGSSRAARDNAASVSDWYFTNGNTLEGLKAQIDDIQAKAA 238

Query: 142 KAGRTLRFGIRLHVIVRETTEAAWRAADELI 172
           + G  +R G+   VI R+T E A     ++I
Sbjct: 239 QNGHKVRIGVNAFVIARDTEEEAQAVLQDII 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 946,132
Number of extensions: 39100
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 3
Length of query: 276
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,222,130
Effective search space: 234648960
Effective search space used: 234648960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)