BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0046.0025.p (278 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 247 7e-67 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 107 1e-24 gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 105 5e-24 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 103 2e-23 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 78 9e-16 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 247 bits (631), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 122/131 (93%), Positives = 128/131 (97%) Query: 1 VILWFGIDETSKLFLVSVGVFFPIYLNTFHGIRSVDKGLLEMAKSYGLSGWPLYRDVILP 60 VILWFGIDET+KLFLVSVGVFFP+YLNTFHGIRSVD+GL+EMAKSYGLSGWPLYRDVILP Sbjct: 138 VILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILP 197 Query: 61 GALPSILVGVRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLG 120 GALP+ILVG+RFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLG Sbjct: 198 GALPAILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLG 257 Query: 121 KLADVLARSLE 131 KLAD AR LE Sbjct: 258 KLADTAARWLE 268 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 107 bits (267), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 59/131 (45%), Positives = 88/131 (67%) Query: 1 VILWFGIDETSKLFLVSVGVFFPIYLNTFHGIRSVDKGLLEMAKSYGLSGWPLYRDVILP 60 ++LW GIDET K+ L+++G FFP+YLN GIR +D L+E+ + GL+ L ++LP Sbjct: 130 LLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLP 189 Query: 61 GALPSILVGVRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLG 120 +LP + G+R L L W+ L+ AE I+A G+GY+ + RE + D+VL IL+ ALLG Sbjct: 190 ASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLAAILILALLG 249 Query: 121 KLADVLARSLE 131 KL+D L R++E Sbjct: 250 KLSDGLLRAVE 260 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 105 bits (261), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 54/117 (46%), Positives = 76/117 (64%) Query: 1 VILWFGIDETSKLFLVSVGVFFPIYLNTFHGIRSVDKGLLEMAKSYGLSGWPLYRDVILP 60 +I+W GI E SK+ L+++ +F P+ L+ G+RS+ + + A S G + W L +V+LP Sbjct: 153 MIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRSLPQERVNAALSLGATRWQLLTEVVLP 212 Query: 61 GALPSILVGVRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYA 117 ALP IL G+R ALG+ W L+ AE I++ GIGYM M+A FL TD V VGI L A Sbjct: 213 SALPEILTGIRIALGVGWSTLVAAELIASNRGIGYMIMSASHFLATDAVFVGIALIA 269 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 52/124 (41%), Positives = 78/124 (62%) Query: 2 ILWFGIDETSKLFLVSVGVFFPIYLNTFHGIRSVDKGLLEMAKSYGLSGWPLYRDVILPG 61 ILWFG+ LFL+S+G FFP+ +NT G+R VD L A++ G S L+ V+LP Sbjct: 132 ILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPA 191 Query: 62 ALPSILVGVRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGK 121 A+P IL GVR +G ++++IVAE I+ G+G+ M ARE+ +D ++ G++ LLG Sbjct: 192 AVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGL 251 Query: 122 LADV 125 D+ Sbjct: 252 AIDL 255 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 77.8 bits (190), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 70/123 (56%) Query: 2 ILWFGIDETSKLFLVSVGVFFPIYLNTFHGIRSVDKGLLEMAKSYGLSGWPLYRDVILPG 61 ++W G E SK+ L+ F + LNT G+++V+ L A S G W + VILP Sbjct: 119 VIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPS 178 Query: 62 ALPSILVGVRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGK 121 +P ++ G R A+G ++ ++ AE +SA+ G+G + AR F +T+ V VGI+ +LG Sbjct: 179 TVPFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGY 238 Query: 122 LAD 124 L D Sbjct: 239 LFD 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.141 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 876,194 Number of extensions: 35967 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 13 Length of query: 278 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 194 Effective length of database: 1,222,130 Effective search space: 237093220 Effective search space used: 237093220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)