BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0018.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309786|ref|YP_003773878.1| D-arabinitol 4-dehydrogenase [H...    92   9e-20

>gi|300309786|ref|YP_003773878.1| D-arabinitol 4-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score = 91.7 bits (226), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 115/245 (46%), Gaps = 17/245 (6%)

Query: 30  VHLGLGAFHRAHQAVYTDTVLAQG-DLRWGIVGVSLRS--AETRDALAPQDHLYTLAIRG 86
           +H+G G+FHRAHQAVY + +   G D RW +   ++R+  +   +ALA Q   YTL    
Sbjct: 19  LHIGAGSFHRAHQAVYLNALRESGADRRWQLALANIRADMSPLLEALARQQGQYTLETVT 78

Query: 87  TEGEQ-LRVIGSLVDSLVAPESPAAVLAAMRHPHCHVVSLTVTEKGYCHDPASNTLRFDH 145
            +G++  + I S+   L        ++AA       ++S TVTE GY  D   + L   +
Sbjct: 79  PQGQRSYQRIASIGRILPWDAQLTQLIAAGAEERTRIISFTVTEGGYYLD-HQHQLDTSN 137

Query: 146 PDIVHDLAHADAAVGFIVRALXAPRSAVGFIVRALDQRRDAG-LPPFTVLSCDNLPSNGN 204
            D+  DL  A    G       APR+  G I   L  R  A      T+L+CDNL  NG 
Sbjct: 138 ADLAEDLRCALDGSG-------APRTIYGAIAAILHARSQAHPQAALTLLNCDNLRHNGE 190

Query: 205 TSRALVLAFAE-RVDADLSKWISLHGAFPNSMVDRIVPKTTEEDRVAIAARLGVDEKXLP 263
             R  +  F   R +  L  W+  +   PN+MVDRI P+ T      +    G+D+   P
Sbjct: 191 RFRDGLRQFLTLRGETALVSWMQANTTSPNAMVDRITPRPTAAVAQRVKEATGIDD---P 247

Query: 264 QRLLG 268
             L+G
Sbjct: 248 CALMG 252


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,159,356
Number of extensions: 48624
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)