BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0046.0013.p (351 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 243 2e-65 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 232 3e-62 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 231 7e-62 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 231 1e-61 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 228 4e-61 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 243 bits (620), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 119/241 (49%), Positives = 166/241 (68%), Gaps = 5/241 (2%) Query: 44 LRLDRVTRRFGGPAKTTDAPQIAALDGLQMDIARGEFIALLGPSGCGKSTALNCIAGLLP 103 + L +V + +G K D + G+ +IA GEFI ++GPSGCGKST L +AGL Sbjct: 4 IHLKQVRKTYGAGTKAVDV-----IHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEE 58 Query: 104 LSDGGIYLDDHRIDTLPPEQRGFGMVFQNYALFPHMTVARNVGFGLLMRGTPAAEIQTRV 163 +S G I + D ++ L P++R MVFQNYAL+PHMTV +N+ +GL ++G +EI RV Sbjct: 59 ISSGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARV 118 Query: 164 KRALDLVQLAQHMNKLPGQLSGGQQQRVAIARAIVIEPPLILMDEPLSNLDAKLRLEMRS 223 +RA +++L + + P QLSGGQ+QRVA+ RAIV +P + L DEPLSNLDAKLR++MR Sbjct: 119 QRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRL 178 Query: 224 EIRRIHGELGRTTLYVTHDQDEALSLADRIVVMKDGKVQQIGTPPEVYGQPSNLAVARFM 283 EI+++H L T+LYVTHDQ EA++L R++VM G +QIGTP EVY +P+ VA F+ Sbjct: 179 EIQKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFI 238 Query: 284 G 284 G Sbjct: 239 G 239 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 232 bits (591), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 116/227 (51%), Positives = 158/227 (69%), Gaps = 1/227 (0%) Query: 58 KTTDAPQIAALDGLQMDIARGEFIALLGPSGCGKSTALNCIAGLLPLSDGGIYLDDHRID 117 KT D + L GL +DI GEF L+GPSGCGKST L + GL +S G + + ++ Sbjct: 11 KTYDG-RADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGELAIGGQVVN 69 Query: 118 TLPPEQRGFGMVFQNYALFPHMTVARNVGFGLLMRGTPAAEIQTRVKRALDLVQLAQHMN 177 LPP +RG MVFQ+YAL+PHM V +N+ FGL + G ++I R++ A ++++ + Sbjct: 70 HLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAAILKIDHLLQ 129 Query: 178 KLPGQLSGGQQQRVAIARAIVIEPPLILMDEPLSNLDAKLRLEMRSEIRRIHGELGRTTL 237 +LP +LSGGQ+QRVAI RAIV +P L L DEPLSNLDA LR++ R EI ++H +L T + Sbjct: 130 RLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKLHRQLAATIV 189 Query: 238 YVTHDQDEALSLADRIVVMKDGKVQQIGTPPEVYGQPSNLAVARFMG 284 YVTHDQ EA++L D+IVVM +G++QQ GTP E+Y QP NL VA F+G Sbjct: 190 YVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIG 236 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 231 bits (589), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 123/260 (47%), Positives = 170/260 (65%), Gaps = 6/260 (2%) Query: 68 LDGLQMDIARGEFIALLGPSGCGKSTALNCIAGLLPLSDGGI------YLDDHRIDTLPP 121 L G+ M++ RGE +ALLGPSG GK+T L +AGL G I D R +P Sbjct: 23 LKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGARNFEMPA 82 Query: 122 EQRGFGMVFQNYALFPHMTVARNVGFGLLMRGTPAAEIQTRVKRALDLVQLAQHMNKLPG 181 E+R G+VFQ+YAL+PH TVA NV +GL +R TP+ EI TRVK L + L + P Sbjct: 83 EERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATRVKAVLSQLGLGHLGERYPH 142 Query: 182 QLSGGQQQRVAIARAIVIEPPLILMDEPLSNLDAKLRLEMRSEIRRIHGELGRTTLYVTH 241 QLSGGQQQRVAIARA+V P +IL+DEPLSNLDAKLR E R+ +R + LG + L VTH Sbjct: 143 QLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMVTH 202 Query: 242 DQDEALSLADRIVVMKDGKVQQIGTPPEVYGQPSNLAVARFMGYRNELILDVVAQDGQAV 301 DQ EA++++DRI+++ +G+++Q GTP +Y P+ L A FMG N+L +V++++G+ V Sbjct: 203 DQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTAEFMGSNNKLAAEVLSREGERV 262 Query: 302 SLAGPGINLVGIPKMRLNAR 321 ++ G V + R + R Sbjct: 263 TVKLDGGTAVATLRGRSDVR 282 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 231 bits (588), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 113/215 (52%), Positives = 155/215 (72%) Query: 70 GLQMDIARGEFIALLGPSGCGKSTALNCIAGLLPLSDGGIYLDDHRIDTLPPEQRGFGMV 129 G+ +DIA GEF L+GPSGCGKST L +AGL ++ G I + ++ + P+ R MV Sbjct: 21 GVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILIGGTVVNNVQPKDRDIAMV 80 Query: 130 FQNYALFPHMTVARNVGFGLLMRGTPAAEIQTRVKRALDLVQLAQHMNKLPGQLSGGQQQ 189 FQNYAL+PHMTV N+ F L + A + RVK+A D++ L Q +++ P QLSGGQ+Q Sbjct: 81 FQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADILGLNQLLDRYPRQLSGGQRQ 140 Query: 190 RVAIARAIVIEPPLILMDEPLSNLDAKLRLEMRSEIRRIHGELGRTTLYVTHDQDEALSL 249 RVA+ RAIV +P + L DEPLSNLDAKLR++MR+EI+ +H L T++YVTHDQ EA+++ Sbjct: 141 RVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQRLKTTSIYVTHDQIEAMTM 200 Query: 250 ADRIVVMKDGKVQQIGTPPEVYGQPSNLAVARFMG 284 AD+IVVM+DG V+Q G P ++Y P+NL VA F+G Sbjct: 201 ADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIG 235 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 228 bits (582), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 109/218 (50%), Positives = 153/218 (70%) Query: 67 ALDGLQMDIARGEFIALLGPSGCGKSTALNCIAGLLPLSDGGIYLDDHRIDTLPPEQRGF 126 A+ + ++ G+F LLGPSGCGKST L IAGL S G I++ + LPP QR Sbjct: 18 AVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIGGRDVTQLPPAQRKI 77 Query: 127 GMVFQNYALFPHMTVARNVGFGLLMRGTPAAEIQTRVKRALDLVQLAQHMNKLPGQLSGG 186 MVFQ+YALFPH++V N+ FG+ +R P A +TR+KR D++ LA + + P QLSGG Sbjct: 78 SMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILGLAHLLERRPAQLSGG 137 Query: 187 QQQRVAIARAIVIEPPLILMDEPLSNLDAKLRLEMRSEIRRIHGELGRTTLYVTHDQDEA 246 QQQRVA+ RAI+ + P+ LMDEPLSNLDA+LR EMR EIR + +L T +YVTHDQ EA Sbjct: 138 QQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQLNMTMVYVTHDQTEA 197 Query: 247 LSLADRIVVMKDGKVQQIGTPPEVYGQPSNLAVARFMG 284 +S+AD+++++++G+++Q P ++Y QP+ ARF+G Sbjct: 198 MSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIG 235 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,061,730 Number of extensions: 46096 Number of successful extensions: 570 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 145 Length of query: 351 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 265 Effective length of database: 1,212,660 Effective search space: 321354900 Effective search space used: 321354900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)