BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0009.p
         (180 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312626|ref|YP_003776718.1| GntR family transcription regul...    67   1e-12
gi|300309587|ref|YP_003773679.1| GntR family transcription regul...    61   7e-11

>gi|300312626|ref|YP_003776718.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score = 66.6 bits (161), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 81  EADRTFHLSIARATGNSALVSVIENLWDQR-GRLWIKMEEHFHTEELRQQTLVDHRRILE 139
           EADR FH+ +A ATGNS LV ++  L+D R G L+ ++  HF    + Q+ + +H  ++E
Sbjct: 141 EADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFKRLHSHFDGTRVWQEAIDEHALVME 200

Query: 140 AIVDRDPEGARKAMHAHLERVTTEFS 165
           A+  R+PE AR AM  H++   T +S
Sbjct: 201 ALRQRNPEQARAAMRRHMDIAFTRYS 226


>gi|300309587|ref|YP_003773679.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 60.8 bits (146), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 2/98 (2%)

Query: 63  LRALND-MERFYHDRPNNEEADRTFHLSIARATGNSALVSVIENLWDQR-GRLWIKMEEH 120
           LRA+ D MER      +    DR FH+ IAR TGN  LV  +  L+D+R   +  K+ +H
Sbjct: 137 LRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQDPISAKLLDH 196

Query: 121 FHTEELRQQTLVDHRRILEAIVDRDPEGARKAMHAHLE 158
           +  E+     L +HR ILEAI  RD   A+ AM  HL+
Sbjct: 197 YEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLK 234


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 539,359
Number of extensions: 18841
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 180
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 101
Effective length of database: 1,245,805
Effective search space: 125826305
Effective search space used: 125826305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)