BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0046.0007.p (384 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permeas... 340 1e-94 gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas... 266 1e-72 gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme... 102 5e-23 gi|300312150|ref|YP_003776242.1| molybdate ABC transporter perme... 92 5e-20 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 81 2e-16 >gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 296 Score = 340 bits (871), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 184/203 (90%), Positives = 195/203 (96%) Query: 182 FGGIVAWVLVRYKFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWIGRYLVPLGIKV 241 FGGIVAWVLVRY+FPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGW+G+ L PLGIKV Sbjct: 94 FGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLAPLGIKV 153 Query: 242 AFTPLGVLVALTFIGLPFVVRTVQPVLEDAERELEEAAASLGASRLQTFARVIFPTVFPA 301 AFTPLGVLVALTFIGLPFVVRTVQPVLE+AERELEEAAASLGASR QTF RVIFPTV PA Sbjct: 154 AFTPLGVLVALTFIGLPFVVRTVQPVLEEAERELEEAAASLGASRWQTFTRVIFPTVLPA 213 Query: 302 LLTGFALAFARATGEYGSVVFIAGNMPMVSEITPLFIITKLEQYDYTGATAIAVVMLIVS 361 LLTGFALAFARA+GEYGSVVFIAGNMPMVSEITPLFI+TKLEQYDY GATAIA+VML+VS Sbjct: 214 LLTGFALAFARASGEYGSVVFIAGNMPMVSEITPLFIVTKLEQYDYAGATAIAMVMLLVS 273 Query: 362 FALLLTINLLQAWVRKRGQAEKV 384 F LLLTINLLQAW RKRGQ+E++ Sbjct: 274 FVLLLTINLLQAWTRKRGQSERI 296 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 72/132 (54%) Query: 40 IGIAFAFLTLFLFVPLVAVFYEGLKKGWDVYIDNIIEPDAWSAIKLTLLTAVIAVPLNLV 99 +G +L L + +PL A+F + W+ +I+ + P ++ +L+ ++I LN++ Sbjct: 34 LGFTLFYLALIVLIPLSALFLKTFTLTWEGFIEAVTSPRVMASYRLSFGASLIGAFLNVI 93 Query: 100 FGVTAAWSIAKFEFRGKNILLTLIDLPFSVSPVISGLIYVLLFGLQGYFGPWLREHDIKI 159 FG AW + ++ F GK I+ L+DLPF++ ++G+ L+ G+ G L IK+ Sbjct: 94 FGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLAPLGIKV 153 Query: 160 LFAVPGIVLAXS 171 F G+++A + Sbjct: 154 AFTPLGVLVALT 165 >gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 266 bits (681), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 135/161 (83%), Positives = 145/161 (90%), Gaps = 1/161 (0%) Query: 9 IAASAAAVAPRGEPAYTPAATLEPLWVRIVLIGIAFAFLTLFLFVPLVAVFYEGLKKGWD 68 I+A+ A+A RGEP TPAAT EP WVR +LIGIA AFLTLFLFVPLVAVFYE L+KGWD Sbjct: 6 ISAAHQAIA-RGEPPLTPAATAEPFWVRALLIGIALAFLTLFLFVPLVAVFYEALRKGWD 64 Query: 69 VYIDNIIEPDAWSAIKLTLLTAVIAVPLNLVFGVTAAWSIAKFEFRGKNILLTLIDLPFS 128 VY+ +I E DAWSAIKLTL+TA IAVPLNLVFGV AAW+IAKFEFRGKN+LLTLIDLPFS Sbjct: 65 VYVASITEADAWSAIKLTLITAAIAVPLNLVFGVAAAWAIAKFEFRGKNLLLTLIDLPFS 124 Query: 129 VSPVISGLIYVLLFGLQGYFGPWLREHDIKILFAVPGIVLA 169 VSPVISGLIYVLLFGLQGY GPWLREHDIKILFAVPGIVLA Sbjct: 125 VSPVISGLIYVLLFGLQGYLGPWLREHDIKILFAVPGIVLA 165 Score = 112 bits (279), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 113/202 (55%) Query: 182 FGGIVAWVLVRYKFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWIGRYLVPLGIKV 241 FG AW + +++F GK ++ L+DLPF++ ++G+ L+ G++G +L IK+ Sbjct: 96 FGVAAAWAIAKFEFRGKNLLLTLIDLPFSVSPVISGLIYVLLFGLQGYLGPWLREHDIKI 155 Query: 242 AFTPLGVLVALTFIGLPFVVRTVQPVLEDAERELEEAAASLGASRLQTFARVIFPTVFPA 301 F G+++A F+ PFV R + P+++ E EEAA LGAS +TF V P + Sbjct: 156 LFAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEEAALVLGASGWRTFWHVTLPNIKWG 215 Query: 302 LLTGFALAFARATGEYGSVVFIAGNMPMVSEITPLFIITKLEQYDYTGATAIAVVMLIVS 361 LL G L ARA GE+G+V ++G++ + PL + +++ TGA A+A ++ ++ Sbjct: 216 LLYGVILCNARAMGEFGAVSVVSGHIRGETNTIPLQVEILYNEFNITGAFAVASLLAFLA 275 Query: 362 FALLLTINLLQAWVRKRGQAEK 383 L ++++ + ++ A + Sbjct: 276 LVTLAIKSVIEWRLHQQHSASE 297 >gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 224 Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 98/180 (54%) Query: 187 AWVLVRYKFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWIGRYLVPLGIKVAFTPL 246 A+ L R++ + ID+++ LP LP V G L L+ + G +G +L +GI++ FT Sbjct: 30 AYGLSRWRSALRDFIDSVLTLPLVLPPTVLGYYLLVLFGRRGALGAWLERMGIELVFTWQ 89 Query: 247 GVLVALTFIGLPFVVRTVQPVLEDAERELEEAAASLGASRLQTFARVIFPTVFPALLTGF 306 G ++A T + P V+++ + E + ++E+AA LG S F RV P ++ G Sbjct: 90 GAVLASTVVAFPLVLKSARAAFESVDHQMEDAARVLGVSEAGVFFRVSLPLAMRGIMAGV 149 Query: 307 ALAFARATGEYGSVVFIAGNMPMVSEITPLFIITKLEQYDYTGATAIAVVMLIVSFALLL 366 LAFARA GE+G+ + +AGN+P ++ + I ++ D AT + V+ I LL+ Sbjct: 150 LLAFARALGEFGATLMVAGNLPGRTQTLSVAIYEAVQAGDDGSATLLVVITSITCIVLLM 209 Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 54/92 (58%) Query: 80 WSAIKLTLLTAVIAVPLNLVFGVTAAWSIAKFEFRGKNILLTLIDLPFSVSPVISGLIYV 139 W+ + L+L A +A LNLV GV AA+ ++++ ++ + +++ LP + P + G + Sbjct: 5 WTPLLLSLKVAGLATLLNLVLGVAAAYGLSRWRSALRDFIDSVLTLPLVLPPTVLGYYLL 64 Query: 140 LLFGLQGYFGPWLREHDIKILFAVPGIVLAXS 171 +LFG +G G WL I+++F G VLA + Sbjct: 65 VLFGRRGALGAWLERMGIELVFTWQGAVLAST 96 >gi|300312150|ref|YP_003776242.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 92.4 bits (228), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 100/202 (49%), Gaps = 1/202 (0%) Query: 183 GGIVAWVLVRYKFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWIGRYLVPLGIKV- 241 G +AW L R + + + A+V LP LP AV G L L G +G+ LG+ + Sbjct: 29 GTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLVLMGPQGPVGQLTQALGLGLL 88 Query: 242 AFTPLGVLVALTFIGLPFVVRTVQPVLEDAERELEEAAASLGASRLQTFARVIFPTVFPA 301 F+ G+++A +PFVV+ +Q E E AA+L AS L F V P P Sbjct: 89 PFSFGGLVLASLLYSMPFVVQPLQNAFEAVGERPMEVAATLRASPLDAFFTVAVPLAGPG 148 Query: 302 LLTGFALAFARATGEYGSVVFIAGNMPMVSEITPLFIITKLEQYDYTGATAIAVVMLIVS 361 LT L FA GE+G V+ I GN+P + + + I +E ++Y A +A ML+ S Sbjct: 149 FLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYDHVEAFEYAQAHRLAGAMLVFS 208 Query: 362 FALLLTINLLQAWVRKRGQAEK 383 F +LL + L + R +A K Sbjct: 209 FLVLLVMMRLGRAGKTRLKAGK 230 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 97/184 (52%), Gaps = 8/184 (4%) Query: 186 VAWVLVRYKFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWIGRYLVPL---GIKVA 242 V L R++FPG+ ++ A++ P A P V G + L + G IG L + A Sbjct: 97 VGLFLQRHRFPGQALLLAMLTFPLAFPGVVVGFMVIMLAGRQGLIGALTNGLFGESLVFA 156 Query: 243 FTPLGVLVALTFIGLPFVVRTVQPVLEDAERELEEAAASLGASRLQTFARVIFPTVFPAL 302 ++ G+ + + +P V+ TV E + LEEAA SLGA Q V+ P + PAL Sbjct: 157 YSLAGLFLGYLYFSIPRVILTVVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPAL 216 Query: 303 LTGFALAFARATGEYGSVVFIAGNMPMVSEITPLFIITKLEQY-DYTGATAIAVVMLIVS 361 ++ A+ FA + G +G+ +A N+ ++ P+ I + Y ++ A ++++V+ +++ Sbjct: 217 VSSGAICFATSVGAFGTAFTLAANI----DVLPMTIYNEFTGYANFATAASLSIVLGVIT 272 Query: 362 FALL 365 +A+L Sbjct: 273 WAVL 276 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.143 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,163,202 Number of extensions: 47663 Number of successful extensions: 294 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 297 Number of HSP's successfully gapped: 13 Length of query: 384 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 297 Effective length of database: 1,207,925 Effective search space: 358753725 Effective search space used: 358753725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)