BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0046.0006.p (309 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas... 513 e-146 gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permeas... 127 8e-31 gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme... 112 4e-26 gi|300312150|ref|YP_003776242.1| molybdate ABC transporter perme... 80 2e-16 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 67 1e-12 >gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 513 bits (1320), Expect = e-146, Method: Compositional matrix adjust. Identities = 258/291 (88%), Positives = 272/291 (93%), Gaps = 1/291 (0%) Query: 9 IAASAAAVAPRGEPAYTPAATLEPLWVRIVLIGIAFAFLTLFLFVPLVAVFYEGLKKGWD 68 I+A+ A+A RGEP TPAAT EP WVR +LIGIA AFLTLFLFVPLVAVFYE L+KGWD Sbjct: 6 ISAAHQAIA-RGEPPLTPAATAEPFWVRALLIGIALAFLTLFLFVPLVAVFYEALRKGWD 64 Query: 69 VYIDNIIEPDAWSAIKLTLLTAVIAVPLNLVFGVTAAWSIAKFEFRGKNILLTLIDLPFS 128 VY+ +I E DAWSAIKLTL+TA IAVPLNLVFGV AAW+IAKFEFRGKN+LLTLIDLPFS Sbjct: 65 VYVASITEADAWSAIKLTLITAAIAVPLNLVFGVAAAWAIAKFEFRGKNLLLTLIDLPFS 124 Query: 129 VSPVISGLIYVLLFGLQGYFGPWLREHDIKILFAVPGIVLATVFVTFPFVARELIPLMQS 188 VSPVISGLIYVLLFGLQGY GPWLREHDIKILFAVPGIVLAT+FVTFPFVARELIPLMQS Sbjct: 125 VSPVISGLIYVLLFGLQGYLGPWLREHDIKILFAVPGIVLATIFVTFPFVARELIPLMQS 184 Query: 189 QGSEEEEAALVLGASGWKTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGE 248 QGSEEEEAALVLGASGW+TFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGE Sbjct: 185 QGSEEEEAALVLGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGE 244 Query: 249 TNTIPLQVEILYNEFNIVGAFAVASLLAFLALVTLAIKSFIEWRLHKQLTA 299 TNTIPLQVEILYNEFNI GAFAVASLLAFLALVTLAIKS IEWRLH+Q +A Sbjct: 245 TNTIPLQVEILYNEFNITGAFAVASLLAFLALVTLAIKSVIEWRLHQQHSA 295 >gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 296 Score = 127 bits (320), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 139/257 (54%) Query: 40 IGIAFAFLTLFLFVPLVAVFYEGLKKGWDVYIDNIIEPDAWSAIKLTLLTAVIAVPLNLV 99 +G +L L + +PL A+F + W+ +I+ + P ++ +L+ ++I LN++ Sbjct: 34 LGFTLFYLALIVLIPLSALFLKTFTLTWEGFIEAVTSPRVMASYRLSFGASLIGAFLNVI 93 Query: 100 FGVTAAWSIAKFEFRGKNILLTLIDLPFSVSPVISGLIYVLLFGLQGYFGPWLREHDIKI 159 FG AW + ++ F GK I+ L+DLPF++ ++G+ L+ G+ G L IK+ Sbjct: 94 FGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLAPLGIKV 153 Query: 160 LFAVPGIVLATVFVTFPFVARELIPLMQSQGSEEEEAALVLGASGWKTFWHVTLPNIKWG 219 F G+++A F+ PFV R + P+++ E EEAA LGAS W+TF V P + Sbjct: 154 AFTPLGVLVALTFIGLPFVVRTVQPVLEEAERELEEAAASLGASRWQTFTRVIFPTVLPA 213 Query: 220 LLYGVILCNARAMGEFGAVSVVSGHIRGETNTIPLQVEILYNEFNIVGAFAVASLLAFLA 279 LL G L ARA GE+G+V ++G++ + PL + +++ GA A+A ++ ++ Sbjct: 214 LLTGFALAFARASGEYGSVVFIAGNMPMVSEITPLFIVTKLEQYDYAGATAIAMVMLLVS 273 Query: 280 LVTLAIKSFIEWRLHKQ 296 V L + ++ K+ Sbjct: 274 FVLLLTINLLQAWTRKR 290 >gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 224 Score = 112 bits (280), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 104/177 (58%) Query: 80 WSAIKLTLLTAVIAVPLNLVFGVTAAWSIAKFEFRGKNILLTLIDLPFSVSPVISGLIYV 139 W+ + L+L A +A LNLV GV AA+ ++++ ++ + +++ LP + P + G + Sbjct: 5 WTPLLLSLKVAGLATLLNLVLGVAAAYGLSRWRSALRDFIDSVLTLPLVLPPTVLGYYLL 64 Query: 140 LLFGLQGYFGPWLREHDIKILFAVPGIVLATVFVTFPFVARELIPLMQSQGSEEEEAALV 199 +LFG +G G WL I+++F G VLA+ V FP V + +S + E+AA V Sbjct: 65 VLFGRRGALGAWLERMGIELVFTWQGAVLASTVVAFPLVLKSARAAFESVDHQMEDAARV 124 Query: 200 LGASGWKTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTIPLQV 256 LG S F+ V+LP G++ GV+L ARA+GEFGA +V+G++ G T T+ + + Sbjct: 125 LGVSEAGVFFRVSLPLAMRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVAI 181 >gi|300312150|ref|YP_003776242.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 112/236 (47%), Gaps = 13/236 (5%) Query: 78 DAWSAIKLTLLTAVIAVPLNLVFGVTAAWSIAKFEFRGKNILLTLIDLPFSVSPVISGLI 137 + WSA++LTL A I L L+ G AW +A+ ++ + ++ LP + P + G Sbjct: 6 EDWSAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFY 65 Query: 138 YVLLFGLQGYFGPWLREHDIKIL-FAVPGIVLATVFVTFPFVARELIPLMQSQGSEEEEA 196 ++L G QG G + + +L F+ G+VLA++ + PFV + L ++ G E Sbjct: 66 LLVLMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAVGERPMEV 125 Query: 197 ALVLGASGWKTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTIPLQV 256 A L AS F+ V +P G L +L A +GEFG V ++ G+I G+T + +Q+ Sbjct: 126 AATLRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQI 185 Query: 257 EILYNEF------NIVGAFAVASLLAFLALVTLA------IKSFIEWRLHKQLTAH 300 F + GA V S L L ++ L +K+ R ++ TA Sbjct: 186 YDHVEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGRAGKTRLKAGKSGRAPQEATAQ 241 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 12/263 (4%) Query: 18 PRGEPAYTPAATLEPLWVRIVLIGIA-FAFLTLFLFVPLVAVFYEGLKKGWDVYIDNIIE 76 P PA P +W+ + G+ F L LV V G G Y+ + Sbjct: 11 PARPPASRPRRAGNQVWLCFAVPGLTLFCAFWLLPMARLVGVGASG-PDGAMAYLSVLTN 69 Query: 77 PDAWSAIKLTLLTAVIAVPLNLVFGVTAAWSIAKFEFRGKNILLTLIDLPFSVSPVISGL 136 ++++ TL + L V + + F G+ +LL ++ P + V+ G Sbjct: 70 RHYFASLVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLTFPLAFPGVVVGF 129 Query: 137 IYVLLFGLQGYFGPW---LREHDIKILFAVPGIVLATVFVTFPFVARELIPLMQSQGSEE 193 + ++L G QG G L + +++ G+ L ++ + P V ++ + Sbjct: 130 MVIMLAGRQGLIGALTNGLFGESLVFAYSLAGLFLGYLYFSIPRVILTVVAAAEKLDPSL 189 Query: 194 EEAALVLGASGWKTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTIP 253 EEAA LGA W+ HV LP + L+ +C A ++G FG ++ +I + +P Sbjct: 190 EEAARSLGARPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTLAANI----DVLP 245 Query: 254 LQVEILYNEFNIVGAFAVASLLA 276 + + YNEF FA A+ L+ Sbjct: 246 MTI---YNEFTGYANFATAASLS 265 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 953,765 Number of extensions: 38808 Number of successful extensions: 238 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 237 Number of HSP's successfully gapped: 11 Length of query: 309 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 224 Effective length of database: 1,217,395 Effective search space: 272696480 Effective search space used: 272696480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)