BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0046.0005.p (223 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 266 1e-72 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 132 2e-32 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 117 7e-28 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 112 2e-26 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 110 6e-26 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 266 bits (680), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 129/144 (89%), Positives = 135/144 (93%) Query: 1 MSIEVKDINKRFGNFVALNNVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDAGQVL 60 MSIEV I KRFG+F ALN+VSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPD+GQVL Sbjct: 1 MSIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVL 60 Query: 61 LDGDDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRAQRPSEAQIRDKVTSL 120 LDG+DASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPR+QRPSEA IR+KV L Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRL 120 Query: 121 LELVQLDWLADRYPPQLSGGQXPR 144 LELVQLDWLADRYPPQLSGGQ R Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQR 144 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/143 (49%), Positives = 94/143 (65%), Gaps = 6/143 (4%) Query: 3 IEVKDINKRFGNFVALNNVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDAGQVLLD 62 + V+++ KRFG+F AL+ VSL GE+ LLGPSGCGKTTLLR IAGLE D+G++ D Sbjct: 13 LSVREVEKRFGSFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLERQDSGRLHAD 72 Query: 63 GDDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRAQRPSEAQIRDKVTSLLE 122 G D S + R G +FQ YALF +++V +N+A+GL R S Q R++VT +L Sbjct: 73 GRDISQLPPQARDYGILFQSYALFPNLSVADNVAYGL------GRMSRQQKRERVTEMLS 126 Query: 123 LVQLDWLADRYPPQLSGGQXPRA 145 +V LD D+YP QLSGGQ R Sbjct: 127 MVGLDGSQDKYPGQLSGGQQQRV 149 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 117 bits (293), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 57/144 (39%), Positives = 92/144 (63%), Gaps = 4/144 (2%) Query: 2 SIEVKDINKRFGNFVALNNVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDAGQVLL 61 S++++ + K+FG+ + V ++ GE T L+GPSGCGK+TLLR++AGLE G++L+ Sbjct: 3 SVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILI 62 Query: 62 DGDDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRAQRPSEAQIRDKVTSLL 121 G + ++R + VFQ+YAL+ HMTV +N+AF L + + +A + ++V Sbjct: 63 GGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLA----KKDKAFVDERVKKAA 118 Query: 122 ELVQLDWLADRYPPQLSGGQXPRA 145 +++ L+ L DRYP QLSGGQ R Sbjct: 119 DILGLNQLLDRYPRQLSGGQRQRV 142 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/188 (40%), Positives = 103/188 (54%), Gaps = 9/188 (4%) Query: 1 MSIEVKDINKRFGNFV-ALNNVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPD-AGQ 58 +SI + K F N AL + L GE LLGPSGCGKTT LR+IAGLE PD G+ Sbjct: 8 VSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGR 67 Query: 59 VLLDGDDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRAQRPSEAQIRDKVT 118 VL +D + + +R VG VFQ+YALF +M+V ENIA+G++++ + + + ++V Sbjct: 68 VLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIR----KIAAGERAERVE 123 Query: 119 SLLELVQLDWLADRYPPQLSGGQXPR---ARGCAGSRRRHLRRARSCPGTGRKRHRIRTS 175 LLE+V L L+ R QLSGGQ R AR A R L + R +R+ Sbjct: 124 RLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSD 183 Query: 176 ARPRSRSL 183 RSL Sbjct: 184 LNKLLRSL 191 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 110 bits (276), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 63/148 (42%), Positives = 91/148 (61%), Gaps = 9/148 (6%) Query: 3 IEVKDINKRFGNFVALNNVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDAGQVLLD 62 IE++ + +RFGN A+ V L+ GE+ ++G SG GK+TL+R + L P +G+++LD Sbjct: 2 IEIQAVTQRFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLD 61 Query: 63 GDD---ASARHVRE--RQVGFVFQHYALFKHMTVFENIAFGLRVKPRAQRPSEAQIRDKV 117 G D SA +RE R +G +FQH+ L +V++NIA L + + S+A+I KV Sbjct: 62 GQDLTSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGK----SKAEIAAKV 117 Query: 118 TSLLELVQLDWLADRYPPQLSGGQXPRA 145 LLELV L L DRYP Q+SGGQ R Sbjct: 118 EPLLELVGLTALRDRYPAQISGGQKQRV 145 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 600,166 Number of extensions: 21286 Number of successful extensions: 395 Number of sequences better than 1.0e-08: 108 Number of HSP's gapped: 289 Number of HSP's successfully gapped: 110 Length of query: 223 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 141 Effective length of database: 1,231,600 Effective search space: 173655600 Effective search space used: 173655600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)