BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0046.0003.p (302 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312785|ref|YP_003776877.1| transcription regulator protein... 359 e-100 gi|300310322|ref|YP_003774414.1| LysR family transcription regul... 144 6e-36 gi|300312373|ref|YP_003776465.1| LysR family transcription regul... 117 9e-28 gi|300312300|ref|YP_003776392.1| LysR family transcription regul... 115 5e-27 gi|300310059|ref|YP_003774151.1| LysR family transcription regul... 111 9e-26 >gi|300312785|ref|YP_003776877.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust. Identities = 181/295 (61%), Positives = 225/295 (76%), Gaps = 3/295 (1%) Query: 8 DPGWELYRSFLAVLQEGSLSAAARSLGLTQPTIGRHVDALEQAVGFALFTRSQHGFMPTE 67 +P WE YRSFL VL+ GSLSAA R +GLTQPT+GRH++ LE +G LF RS GF PT+ Sbjct: 5 EPNWEWYRSFLKVLETGSLSAAGREMGLTQPTVGRHIENLESTLGLKLFVRSFDGFSPTD 64 Query: 68 AALSLQPYAESLAATTAALMRAASEHGGAGEQVRGTVRITASEVIGVEVLPPILLALKRS 127 AAL L+PYA ++AA +AAL RAAS G ++VRGTVR+TASEVI VEVLPPIL AL+ Sbjct: 65 AALELKPYAAAIAANSAALRRAASSQG---KEVRGTVRLTASEVISVEVLPPILAALRHR 121 Query: 128 HPELVIELALSSRIEDLLRREADIAVRMVQPTQEVLVARRIGAIELGLHAHKDYLALHGT 187 HPEL +EL LS++ +DLL+READIAVRM +P Q+ LVA+R+G+IELGLHAH+ YL +HG Sbjct: 122 HPELRVELVLSNKADDLLQREADIAVRMFRPAQDALVAKRLGSIELGLHAHQSYLTVHGA 181 Query: 188 PKDLAQLDRHAVIGFDKETAFIRSAAKHMPALRRSQFALRTSSDIAQLAMIRAGYGIGFC 247 PK + L H +IGFD+E+A++R+ K +P L R+ ALRT SD+AQLA IRAG+GIG C Sbjct: 182 PKSVDALADHTLIGFDQESAYVRNVLKQIPWLSRAALALRTDSDLAQLAAIRAGFGIGIC 241 Query: 248 QTPLARRDANLVRVLARQFSFKLDTWVVMHEDLRARARVRVAFDALASGLQEYIR 302 Q LA RD LVR+L RQF+ K++TWV MHEDLRA R V F AL +GL YIR Sbjct: 242 QVALAARDVALVRLLPRQFALKMETWVAMHEDLRASPRCAVTFAALVAGLGAYIR 296 >gi|300310322|ref|YP_003774414.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 144 bits (364), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 91/288 (31%), Positives = 155/288 (53%), Gaps = 4/288 (1%) Query: 11 WELYRSFLAVLQEGSLSAAARSLGLTQPTIGRHVDALEQAVGFALFTRSQHGFMPTEAAL 70 W+ R FLA+ + G+L AA +L L Q T+GR + ALE+++G LF R+ +G++PT A Sbjct: 3 WDNARIFLAIYRVGTLRGAAETLELDQATVGRRLAALERSLGARLFLRTPNGYVPTPAGE 62 Query: 71 SLQPYAESLAATTAALMRAASEHGGAGEQVRGTVRITASEVIGVEVLPPILLALKRSHPE 130 A+ + L R + G E++ G VR+ A++V L P L L++ HP Sbjct: 63 MAAAAAQQMEQGAEQLQR---QMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPH 119 Query: 131 LVIELALSSRIEDLLRREADIAVRMVQPTQEVLVARRIGAIELGLHAHKDYLALHGTPKD 190 + + L+ S++I +L +READIAVR ++P L+AR + + ++A + Y+ G P+ Sbjct: 120 IRVVLSTSTQITNLTKREADIAVRTLRPDAPDLIARHLKRLHTAIYASRSYVKKRGLPEP 179 Query: 191 LAQLDRHAVIGFDKETAFIRSAAKHMPALRRSQFALRTSSDIAQLAMIRAGYGIGFCQTP 250 L H V+ + + + +S ++ +Q A+ S+ + ++AG+G+G T Sbjct: 180 GTGLKGHDVVIYQRSVSPAKSEQICGESIINAQVAMEVSTGLVMYDCLQAGFGLGELPTH 239 Query: 251 LARRDANLVRVLARQFSFKLDTWVVMHEDLRARARVRVAFDALASGLQ 298 + + + LVRV Q D W+V+H DL ARVR DA+ + + Sbjct: 240 VGDKASGLVRVWP-QRETPYDMWLVLHSDLNRTARVRAVADAIIAAYE 286 >gi|300312373|ref|YP_003776465.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 117 bits (294), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 137/294 (46%), Gaps = 13/294 (4%) Query: 11 WELYRSFLAVLQEGSLSAAARSLGLTQPTIGRHVDALEQAVGFALFTRSQHGFMPTEAAL 70 W+ R FL + + L AA+ LG+ T+ R + E+ VG LF R+ HG+ T Sbjct: 4 WDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGY 63 Query: 71 SLQPYAESLAATTAALMRAASEHGGAGEQVRGTVRITASEVIGVEVLPPILLALKRSHPE 130 L YAE + +T L A E GG ++ G VR+ A+E G VL P + +P Sbjct: 64 RLVEYAEQVEST---LYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPH 120 Query: 131 LVIELALSSRIEDLLRREADIAVRMVQPTQEVLVARRIGAIELGLHAHKDYLALHGTPKD 190 + +++ R +L + EADI+V + +P V ++ L L+A +DYLA H Sbjct: 121 ITVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHT 180 Query: 191 LAQLDRHAVIGFDKETAF---IRSAAKHMPALRRSQFALRTSSDIAQLAMIRAGYGIGFC 247 + L +H IG+ + F +R P R A R++S +AQ AG + Sbjct: 181 MDDLAQHHFIGYIDDLVFSEELRYKDTVAPDAFR---AFRSTSVVAQYTAACAGRALAIL 237 Query: 248 QTPLARRDANLVRVLARQFSFKLDTWVVMHEDLRARARVRVAFDALASGLQEYI 301 LA++ L VL +Q + W+V + R ARV AL S L+E + Sbjct: 238 PCFLAQQSEELAPVLPQQIAITRSFWLVASSEQRHVARV----SALWSYLRECV 287 >gi|300312300|ref|YP_003776392.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 115 bits (288), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 140/289 (48%), Gaps = 15/289 (5%) Query: 11 WELYRSFLAVLQEGSLSAAARSLGLTQPTIGRHVDALEQAVGFALFTRSQHGFMPTEAAL 70 W+ R FL + +EGSLSA+AR L + T+ RHV LE+ + LF R G++ T Sbjct: 25 WDDVRYFLTLSREGSLSASARVLKVEHSTVARHVGNLEKTLRVKLFDRLARGWVLTTEGA 84 Query: 71 SLQPYAESLAATTAALMRAASEHGGAGEQVRGTVRITASEVIGVEVLPPILLALKRSHPE 130 L AE L +L RAA A + G VR++A ++ + L P L A + +P+ Sbjct: 85 ELSKQAEQLEVEMHSLWRAAL----ANTTLSGKVRVSAPPILMSDFLVPRLPAFQEKYPD 140 Query: 131 LVIELALSSRIEDLLRREADIAVRMVQPTQEVLVARRIGAIELGLHAHKDYLALHGTPKD 190 + +E+ +R DL R EADIA+RM +P +LVAR + + +++G P Sbjct: 141 IELEVIGEARGVDLTRGEADIALRMGEPVSPLLVARMLCNVS---------YSVYGIPAW 191 Query: 191 LAQLD-RHAVIGFDKETAFIRSAAKHMPALRRSQFALRTSSDIAQLAMIRAGYGIGFCQT 249 L + + + IG D+E+ R A + + ++ALRT+ A +G G+ Sbjct: 192 LERPESERSFIGLDQESP-CRQKAWLESQVDQRRYALRTNDIRAMCHAAMSGIGLALLPR 250 Query: 250 PLARRDANLVRVLARQFSFKLDTWVVMHEDLRARARVRVAFDALASGLQ 298 + D LV + + ++VMH D+R R+R D L +Q Sbjct: 251 FMVAEDTRLVAIPMPETPPPCPLYLVMHSDVRRAPRIRATADFLIDLIQ 299 >gi|300310059|ref|YP_003774151.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 111 bits (277), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 95/297 (31%), Positives = 137/297 (46%), Gaps = 27/297 (9%) Query: 11 WELYRSFLAVLQEGSLSAAARSLGLTQPTIGRHVDALEQAVGFALFTRSQHGFMPTEAAL 70 WE RSF A + GS S AAR LG+T TIGR + LEQ + LF R T Sbjct: 5 WESLRSFAAFVDAGSFSGAARVLGVTHATIGRRLQQLEQTLAAPLFIRRADDIELTRLGE 64 Query: 71 SLQPYAESLAATTAALMRAASEHGGAGEQVR--GTVRITASEVIGVEVLPPILLALKRSH 128 S+ A ++ T L R AGE +R G +R+ ++ +G L P L +L + Sbjct: 65 SVLAAARAMQDQTRQLARTL-----AGEDLRMEGKLRLACTDAMGTLFLAPRLPSLLQQW 119 Query: 129 PELVIELALSSRIEDLLRREADIAVRMVQPTQEVLVARRIGAIELGLHAHKDYLALHGTP 188 P L IELA+ + L RREAD+A+R +P L+ARR+G + L D +A Sbjct: 120 PALDIELAMGHQTLSLARREADLALRFARPQDGELIARRLGVVRFYLCGTADQVAAWRHQ 179 Query: 189 KDLAQLDRHAVIGFDK------ETAFIRSAAKHMPALRRSQFALRTSSDIAQLAMIRAGY 242 + A VIG+D ET ++ + A P LR++S +AQ RAG Sbjct: 180 RGSA-----PVIGYDDSVPDIPETRWLAAHADGNP------VRLRSASLVAQCMAARAGV 228 Query: 243 GIGFCQTPLARRDANLVRVLARQFSFKLDTWVVMHEDLRARARVRVAFDALASGLQE 299 G+ + L A ++ + + W V H DL+A R+R + L + E Sbjct: 229 GLALLPSYLL---APELQTVESTPQLVRELWAVFHRDLKALPRLRAVLEWLQACCGE 282 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 830,494 Number of extensions: 31308 Number of successful extensions: 251 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 228 Number of HSP's successfully gapped: 46 Length of query: 302 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 217 Effective length of database: 1,217,395 Effective search space: 264174715 Effective search space used: 264174715 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)