BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0046.0002.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310558|ref|YP_003774650.1| hypothetical protein Hsero_1226...   175   2e-45

>gi|300310558|ref|YP_003774650.1| hypothetical protein Hsero_1226
           [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  175 bits (444), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/210 (48%), Positives = 121/210 (57%), Gaps = 18/210 (8%)

Query: 3   AGSVSKRAMCGRCLRAQSNCICSWIRPVTPAARVLILQHPLEIAQAKGSGRLLHLSVAGS 62
           A   S+R +C  C RA + CIC W  P+  A  VLILQHPLE+  AK S RLLHLS+  S
Sbjct: 9   AQPASRRLLCPICQRAMTACICHWTSPIDHAFDVLILQHPLEVGNAKNSVRLLHLSLPAS 68

Query: 63  VLAHGERFDDELLRDLLFG----------GGFQPVLLYPHTPGEPAGALPDLSAP----- 107
            L  G  FD + L  LL G              PVLLY       A    D         
Sbjct: 69  KLVVGSVFDTDELEALLHGPSRLRNVSPSEKVHPVLLYTDDASTSATTYFDARTMRVEGQ 128

Query: 108 ---ERLRLVILDATWRKSRKMLHLHPLLRALPRLPLIDPPASQYRIRKAHRADQLSTLEA 164
              +R+RLVILD TWRKSRKML  +P+L+ LPRL L D PAS+Y IRK+H+ +QLSTLEA
Sbjct: 129 EQFQRVRLVILDGTWRKSRKMLFENPILQTLPRLVLSDTPASRYTIRKSHKPEQLSTLEA 188

Query: 165 ACLALGQLEDDHSRFLPLLQAFDGFVAQQG 194
              AL QLE +  ++ PLL AFD FV QQG
Sbjct: 189 VGYALMQLERNSEKYHPLLTAFDNFVLQQG 218


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 577,813
Number of extensions: 18399
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)