BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0030.p (224 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310322|ref|YP_003774414.1| LysR family transcription regul... 323 8e-90 gi|300312785|ref|YP_003776877.1| transcription regulator protein... 96 2e-21 gi|300310059|ref|YP_003774151.1| LysR family transcription regul... 78 8e-16 gi|300312373|ref|YP_003776465.1| LysR family transcription regul... 73 2e-14 gi|300312300|ref|YP_003776392.1| LysR family transcription regul... 68 6e-13 >gi|300310322|ref|YP_003774414.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 323 bits (828), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 149/211 (70%), Positives = 181/211 (85%) Query: 12 DQLQRQMQGIDERLCGVVRIAATDTMAKHVLMPAMQQLAADHPAIRVVLTTSTQVSNLTR 71 +QLQRQMQGIDERLCGVVR+AATD A+H L+PA+ +L +HP IRVVL+TSTQ++NLT+ Sbjct: 76 EQLQRQMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPHIRVVLSTSTQITNLTK 135 Query: 72 READLAVRSLRPTSPDLISRHLKRLAVGLYASRSYVKKHGQPQPGTALAGHDVVIYQRAV 131 READ+AVR+LRP +PDLI+RHLKRL +YASRSYVKK G P+PGT L GHDVVIYQR+V Sbjct: 136 READIAVRTLRPDAPDLIARHLKRLHTAIYASRSYVKKRGLPEPGTGLKGHDVVIYQRSV 195 Query: 132 SASQLESICGESTANARVAMEVSSGLMLIEAVAAGLGIGELPTHMGDTVPQLVRIWPERA 191 S ++ E ICGES NA+VAMEVS+GL++ + + AG G+GELPTH+GD LVR+WP+R Sbjct: 196 SPAKSEQICGESIINAQVAMEVSTGLVMYDCLQAGFGLGELPTHVGDKASGLVRVWPQRE 255 Query: 192 EPYDMWLVLHSDLNRTARVRAVADAIVAAYD 222 PYDMWLVLHSDLNRTARVRAVADAI+AAY+ Sbjct: 256 TPYDMWLVLHSDLNRTARVRAVADAIIAAYE 286 >gi|300312785|ref|YP_003776877.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 95.9 bits (237), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 107/205 (52%), Gaps = 7/205 (3%) Query: 19 QGIDERLCGVVRIAATDTMAKHVLMPAMQQLAADHPAIRVVLTTSTQVSNLTRREADLAV 78 QG + R G VR+ A++ ++ VL P + L HP +RV L S + +L +READ+AV Sbjct: 90 QGKEVR--GTVRLTASEVISVEVLPPILAALRHRHPELRVELVLSNKADDLLQREADIAV 147 Query: 79 RSLRPTSPDLISRHLKRLAVGLYASRSYVKKHGQPQPGTALAGHDVVIY--QRAVSASQL 136 R RP L+++ L + +GL+A +SY+ HG P+ ALA H ++ + + A + L Sbjct: 148 RMFRPAQDALVAKRLGSIELGLHAHQSYLTVHGAPKSVDALADHTLIGFDQESAYVRNVL 207 Query: 137 ESICGESTANARVAMEVSSGLMLIEAVAAGLGIGELPTHMGDTVPQLVRIWPER-AEPYD 195 + I S A +A+ S L + A+ AG GIG + LVR+ P + A + Sbjct: 208 KQIPWLS--RAALALRTDSDLAQLAAIRAGFGIGICQVALAARDVALVRLLPRQFALKME 265 Query: 196 MWLVLHSDLNRTARVRAVADAIVAA 220 W+ +H DL + R A+VA Sbjct: 266 TWVAMHEDLRASPRCAVTFAALVAG 290 >gi|300310059|ref|YP_003774151.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 77.8 bits (190), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 103/231 (44%), Gaps = 21/231 (9%) Query: 1 VAAVEKMELAADQLQRQMQGIDERLCGVVRIAATDTMAKHVLMPAMQQLAADHPAIRVVL 60 +AA M+ QL R + G D R+ G +R+A TD M L P + L PA+ + L Sbjct: 67 LAAARAMQDQTRQLARTLAGEDLRMEGKLRLACTDAMGTLFLAPRLPSLLQQWPALDIEL 126 Query: 61 TTSTQVSNLTRREADLAVRSLRPTSPDLISRHLKRLAVGLYASRSYVKKHGQPQPGTALA 120 Q +L RREADLA+R RP +LI+R L + L + V + + Sbjct: 127 AMGHQTLSLARREADLALRFARPQDGELIARRLGVVRFYLCGTADQVAAWRHQRGSAPVI 186 Query: 121 GHDVVIYQRAVSASQLESICGESTANARVAMEVSSGLMLIEAVAAGLGIGELPTHM---- 176 G+D + + + + N V + +S + A AG+G+ LP+++ Sbjct: 187 GYDDSV----PDIPETRWLAAHADGNP-VRLRSASLVAQCMAARAGVGLALLPSYLLAPE 241 Query: 177 ---GDTVPQLVRIWPERAEPYDMWLVLHSDLNRTARVRAVADAIVAAYDRL 224 ++ PQLVR ++W V H DL R+RAV + + A L Sbjct: 242 LQTVESTPQLVR---------ELWAVFHRDLKALPRLRAVLEWLQACCGEL 283 >gi|300312373|ref|YP_003776465.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 1/214 (0%) Query: 1 VAAVEKMELAADQLQRQMQGIDERLCGVVRIAATDTMAKHVLMPAMQQLAADHPAIRVVL 60 V E++E ++ G + +L G VR+ AT+ VL P + A +P I V + Sbjct: 66 VEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHITVDM 125 Query: 61 TTSTQVSNLTRREADLAVRSLRPTSPDLISRHLKRLAVGLYASRSYVKKHGQPQPGTALA 120 + NL++ EAD++V RP S + + L + LYASR Y+ +H LA Sbjct: 126 LPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHTMDDLA 185 Query: 121 GHDVVIYQRAVSASQLESICGESTANARVAMEVSSGLMLIEAVAAGLGIGELPTHMGDTV 180 H + Y + S+ +A A +S + A AG + LP + Sbjct: 186 QHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFLAQQS 245 Query: 181 PQLVRIWPER-AEPYDMWLVLHSDLNRTARVRAV 213 +L + P++ A WLV S+ ARV A+ Sbjct: 246 EELAPVLPQQIAITRSFWLVASSEQRHVARVSAL 279 >gi|300312300|ref|YP_003776392.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 68.2 bits (165), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 22/229 (9%) Query: 1 VAAVEKMELA--ADQLQRQMQGI------DERLCGVVRIAATDTMAKHVLMPAMQQLAAD 52 V E EL+ A+QL+ +M + + L G VR++A + L+P + Sbjct: 78 VLTTEGAELSKQAEQLEVEMHSLWRAALANTTLSGKVRVSAPPILMSDFLVPRLPAFQEK 137 Query: 53 HPAIRVVLTTSTQVSNLTRREADLAVRSLRPTSPDLISRHLKRLAVGLYASRSYVKKHGQ 112 +P I + + + +LTR EAD+A+R P SP L++R L ++ +Y +++++ Sbjct: 138 YPDIELEVIGEARGVDLTRGEADIALRMGEPVSPLLVARMLCNVSYSVYGIPAWLER--- 194 Query: 113 PQPGTALAGHD--VVIYQRAVSASQLESICGESTANARVAMEVSSGLMLIEAVAAGLGIG 170 P+ + G D Q+A SQ++ R A+ + + A +G+G+ Sbjct: 195 PESERSFIGLDQESPCRQKAWLESQVD--------QRRYALRTNDIRAMCHAAMSGIGLA 246 Query: 171 ELPTHMGDTVPQLVRI-WPERAEPYDMWLVLHSDLNRTARVRAVADAIV 218 LP M +LV I PE P ++LV+HSD+ R R+RA AD ++ Sbjct: 247 LLPRFMVAEDTRLVAIPMPETPPPCPLYLVMHSDVRRAPRIRATADFLI 295 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.130 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 623,320 Number of extensions: 23150 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 10 Length of query: 224 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 142 Effective length of database: 1,231,600 Effective search space: 174887200 Effective search space used: 174887200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)