BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0024.p (643 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310318|ref|YP_003774410.1| hypothetical protein Hsero_0985... 330 2e-91 gi|300310319|ref|YP_003774411.1| TonB-dependent siderophore rece... 307 2e-84 gi|300309869|ref|YP_003773961.1| TonB-dependent ferric sideropho... 74 5e-14 gi|300309379|ref|YP_003773471.1| TonB-dependent ferric sideropho... 65 1e-11 gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 58 2e-09 >gi|300310318|ref|YP_003774410.1| hypothetical protein Hsero_0985 [Herbaspirillum seropedicae SmR1] Length = 390 Score = 330 bits (846), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 198/341 (58%), Positives = 225/341 (65%), Gaps = 41/341 (12%) Query: 343 PKRLVWHSPRPFSAGCVMTTSTMDVFVKRHHLSVRDVAGLSEEHGFVNHLRSRGIAVSEV 402 P RL WHSPRPFSA CVM T + + VKRHH+ VRDVA L EEH F HL+ +G+ VS Sbjct: 46 PLRLEWHSPRPFSAACVMQTESGPIIVKRHHVRVRDVAALGEEHRFAAHLQEKGLPVSCA 105 Query: 403 LTTVDGATAFTDDHWTYEVHGVAA------------------------------------ 426 L T GATA DD+WTYEV +AA Sbjct: 106 LATASGATALADDYWTYEVFALAAGVDLYREALSWTPFHSCAHAWSAGQMLSRLHQAAAG 165 Query: 427 -----RRSCQVRRTCNTFSQPDPLPALQRYIERYPAIADYLKDRDWRGETVGTLLPFHKQ 481 R + + + FSQ DP+ LQ YI + PAIADYL+ R WRGE LLP+H Sbjct: 166 YEAPARAARPLVASFTIFSQQDPVDPLQAYIAQRPAIADYLEARPWRGEVAQHLLPWHAA 225 Query: 482 LLPYLDELTPLWTHNDWHASNLLWSDRSTAAGVQTILDFGLSDRTCALHDLATAIERNVI 541 L PYLDE PLWTHNDWHASNLLWSD S A VQT+LDFGL DRT ALHDLATAIERN++ Sbjct: 226 LKPYLDEFVPLWTHNDWHASNLLWSDASPQAQVQTVLDFGLCDRTTALHDLATAIERNIV 285 Query: 542 EWLAIQAGKTDAVHPDLLDAMLDGYHLLRPLTSRQWLALAALLPLVHAEFALAELAYFHG 601 EWLAI VH DLLDA+LDGY PL++RQ ALAALLPLVHAEFALAEL YFHG Sbjct: 286 EWLAIPQRDEQLVHLDLLDALLDGYAAQSPLSARQLRALAALLPLVHAEFALAELDYFHG 345 Query: 602 VTRSANNAALAYDAYYLGHAAWFNSAEGQQLLARIAQRAAA 642 VT+SA NA+LAYDAY+LGHAAWF+SAEGQ+LLA + QRA A Sbjct: 346 VTQSAINASLAYDAYFLGHAAWFHSAEGQRLLAHLHQRADA 386 >gi|300310319|ref|YP_003774411.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 723 Score = 307 bits (786), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 141/204 (69%), Positives = 173/204 (84%) Query: 1 VRGFPLDLASGYRINGLSAVGEQNIALENKEQVEIIKGLAGLQGGVLNAGGLVNYVTKRP 60 +RGF LD AS YR+NGL+ GEQ IALENKE+VE +KG+AGLQ GV+ AGGLVNYVTKRP Sbjct: 117 IRGFTLDPASAYRVNGLTVAGEQTIALENKERVEFLKGVAGLQAGVVAAGGLVNYVTKRP 176 Query: 61 ADVRSVMLGTDSNGSRYLSTDLGVLFGDHQQFGLRVNAAHEDINSYVDYSNGYRDFASLA 120 A+VRS+ LGTDSNGSRYL+TDLG LFG+H+QFGLR+NAAHEDI+SYV +G+RDFASL+ Sbjct: 177 ANVRSITLGTDSNGSRYLATDLGALFGEHKQFGLRINAAHEDIHSYVSNGDGWRDFASLS 236 Query: 121 ASWDISTKARLAFNIEYQKKAQKSVAGYQLLGGTTVPSGVSPTTMLSPQPWAQPVRIDSL 180 A+W IS + + F+ EYQ+KAQ+SVAGYQLLGG T+PSGVSP+TML+PQPW+QPVR S+ Sbjct: 237 ATWAISARTLVQFDAEYQQKAQRSVAGYQLLGGATLPSGVSPSTMLTPQPWSQPVRDSSV 296 Query: 181 NFNTRLDLEFNADWRGYITXPKEK 204 N R+D EFNADWRGY+ + + Sbjct: 297 NARLRIDTEFNADWRGYVQAGRSR 320 Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/172 (52%), Positives = 123/172 (71%), Gaps = 7/172 (4%) Query: 176 RIDSLNFNTRLDLEFNADWR----GYITXPKEKTYNLAGATTRDTDRNQFLPQLALIYKP 231 R +L F+ R+ +F+ W+ G E+++N GA TRDT RN FLPQLALI+KP Sbjct: 431 RQKALFFSDRM--QFSQRWQVLAGGRQVWLNEQSFNSTGAVTRDTSRNLFLPQLALIFKP 488 Query: 232 QANMSVYSSYAETLSMGTAAAFWQTNFPTILPPSVARQLETGIKYDWNKDLSFTAAVFRM 291 N+S+Y SYAETLS+G++A FW +NFP LPPSVARQLE G+KY+++ +L+ TAAVFR Sbjct: 489 VQNLSLYGSYAETLSLGSSAPFWVSNFPVTLPPSVARQLEAGVKYEFSPELALTAAVFRT 548 Query: 292 KKAYEYPQPDGA-GGFKYVQQGTQTHNGLELGATGNVTRQLRLSASLAFIQA 342 +KAYEY +PD + GF YVQQG QT+ G+ELGA G +T +L + A+ ++A Sbjct: 549 RKAYEYQKPDNSPTGFTYVQQGQQTNTGVELGANGKLTPRLAIGAAATVLRA 600 >gi|300309869|ref|YP_003773961.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 725 Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 20/246 (8%) Query: 111 NGYRDFASLAASWDISTKARLAFN-IEYQ-----KKAQKSVAGYQLLGGTTV------PS 158 NGY D ++ S D+ +AR A +++ + + + + T V P+ Sbjct: 366 NGYYDQKVVSTSADVGLRARFATGPVQHTLSMAANTLDQQTSYFYFVNATGVASNLYQPA 425 Query: 159 GVSPTTMLSPQPWAQP-VRIDSLNFNTRLDLEFNADWRGYITXP--KEKTYNLAGATTRD 215 ++P T +P Q R+ L L + AD R +T +++ Y+ + +T Sbjct: 426 PLAPVTAARGEPLPQSQTRLSGLALTDTLSI---ADGRLLLTGGLRRQQVYSNSFSTRSS 482 Query: 216 TDRNQFLPQLALIYKPQANMSVYSSYAETLSMGTAAAFWQTNFPTILPPSVARQLETGIK 275 +++ + P L ++ KP N+S+Y++Y LS G A N P +Q E+G+K Sbjct: 483 SNKIGYSPVLGVVVKPLENLSLYANYTAGLSAGGFAGAQYANAGQAFAPYKTKQYESGVK 542 Query: 276 YDWNKDLSFTAAVFRMKKAYEYPQPDGAGGFKYVQQGTQTHNGLELGATGNVTRQLRLSA 335 DW + ++ TAAVF++++A G+ F Q G GLEL A G R LRL A Sbjct: 543 LDWGR-VTTTAAVFQIERANSSTAVVGSQTFA-TQDGRARVRGLELSAYGEAQRGLRLMA 600 Query: 336 SLAFIQ 341 S F + Sbjct: 601 SGTFFE 606 >gi|300309379|ref|YP_003773471.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 790 Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 3/138 (2%) Query: 207 NLAGATTRDTDRNQFLPQLALIYKPQANMSVYSSYAETLSMGTAAAFWQTNFPTILPPSV 266 ++GA + + P L L+ KP A +S+Y++ L+ GT N +L P Sbjct: 536 TVSGAQLSSYEASAISPLLGLVVKPVAGLSLYANTTSGLTRGTIVPTGLANAGQVLAPYR 595 Query: 267 ARQLETGIKYDWNKDLSFTAAVFRMK--KAYEYPQPDGAGGFKYVQQGTQTHNGLELGAT 324 +RQLE G K DW + ++ AA F++ A Q Y G Q + GLEL A Sbjct: 596 SRQLEAGAKLDWGRVMT-QAAWFQIDNPSAVITTQASTPASSSYGYDGRQRNRGLELSAY 654 Query: 325 GNVTRQLRLSASLAFIQA 342 G + R LRL AS F QA Sbjct: 655 GELMRGLRLLASATFYQA 672 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 72/163 (44%), Gaps = 10/163 (6%) Query: 178 DSLNFNTRLDLEFNADWRGYITXPKEKTYNLAGATTRDTDRNQFLPQLALIYKPQANMSV 237 D + F+ RL L W K++T N TT +D + ++ L Y +++ Sbjct: 430 DQIKFDQRLTLTLGGRWDKV----KDETRNYFNRTTTRSDDSALSGRIGLSYLVTRDIAP 485 Query: 238 YSSYAETLSMGTAAAFWQTNFPTILPPSVARQLETGIKYD-WNKDLSFTAAVFRMKKAYE 296 Y SYA + T + F F P+ ARQ E GIKY + FTAA+F + K Sbjct: 486 YVSYATSFLPQTGSDFNGKPFD----PTKARQAEVGIKYQPADGKTLFTAALFELTKT-N 540 Query: 297 YPQPDGAGGFKYVQQGTQTHNGLELGATGNVTRQLRLSASLAF 339 PD A V G GLEL A G + + L LSAS + Sbjct: 541 VQTPDPAHTNFNVLSGEIKSRGLELEAKGEIVKGLNLSASYTY 583 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,969,366 Number of extensions: 84747 Number of successful extensions: 260 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 263 Number of HSP's successfully gapped: 10 Length of query: 643 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 552 Effective length of database: 1,188,985 Effective search space: 656319720 Effective search space used: 656319720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)