BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0021.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311047|ref|YP_003775139.1| arginase/agmatinase/formimionog...    82   6e-17

>gi|300311047|ref|YP_003775139.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 81.6 bits (200), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 115/255 (45%), Gaps = 22/255 (8%)

Query: 5   TVAPRTGH-KTLLYSELVTDMTDLKADIAILGVPFGSAYTPRQFTNDQSNAPQAIRDVTD 63
            V PR G   T++    V D   L  D+  +GVP     + R  T      P+ IR  T+
Sbjct: 12  NVMPRFGGIATMMRLPHVEDPAGL--DVGFVGVPLDIGTSNRSGTR---FGPRQIR--TE 64

Query: 64  RIVRAPEHYDFDIDGPLLQGRTDIRFVDCGDVLPDLAVPGDHQRRAELAIRQILRGGGMP 123
            ++  P  Y+             ++  D GDV  +     D  R  E A  +I   G   
Sbjct: 65  SVLLRP--YNMATRAAPFD---SLKVADLGDVALNPYSLLDSVRMIEEAYDRIYATGCKT 119

Query: 124 IVLGGDHGITNPVLRGFDEV-GPVTIVHIDAHLDWRDEVNGVRDGLSSVIRRASELPFV- 181
           I LGGDH +T P+LR      GPV ++H+DAH D  D +NG +    +  RRA E   + 
Sbjct: 120 ISLGGDHTLTLPILRALARYRGPVGLIHVDAHADVNDTMNGEKIAHGTPFRRAFEEGLLD 179

Query: 182 -KHIVQIGLRAQGSGRPADYEAAKSWGADLISAYELHDIG----MDAVLARIPDGGNYYL 236
            + +VQIGLR  G     D++  ++ G  ++ A E         M+ V A++ D G  YL
Sbjct: 180 PQRVVQIGLRGTGY-HADDFDWCRAQGFRVVQAEECWHRSLAPLMEEVRAQMGD-GPVYL 237

Query: 237 TIDADGLDPTIMPAV 251
           T D DGLDP   P  
Sbjct: 238 TFDIDGLDPAFAPGT 252


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.141    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 956,640
Number of extensions: 46420
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)