BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0020.p (239 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311046|ref|YP_003775138.1| LysR family transcription regul... 84 7e-18 gi|300314076|ref|YP_003778168.1| LysR family transcription regul... 63 2e-11 gi|300313689|ref|YP_003777781.1| LysR family transcription regul... 61 6e-11 gi|300311929|ref|YP_003776021.1| LysR family transcription regul... 60 1e-10 gi|300313746|ref|YP_003777838.1| LysR family transcription regul... 59 5e-10 >gi|300311046|ref|YP_003775138.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 84.3 bits (207), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 115/286 (40%), Gaps = 65/286 (22%) Query: 10 DLRSLRVFCNAAQAGGFAAAEKRLHMSKASISRHVREVEERLGVRLCERGPAGFKLTPEG 69 DLR +RVF + G +AA+ RL++ +++IS + +E RLG RLCERG AGF+LT +G Sbjct: 9 DLRLIRVFLAVVDSHGVSAAQARLNVGQSTISTQLNSLETRLGYRLCERGRAGFRLTAKG 68 Query: 70 EVALKLASDALRSLERIRSEIDAVHGVLSGSLSIGIVEHTLTHPDCKIPEALAILRQR-- 127 E A + +L+ + + L G+L+IG++ HT + ++ E + RQR Sbjct: 69 EKFADAARRMMDALDEFGMQARNLDKRLVGTLAIGLMGHTPAQHNHRLAEVIRRFRQRDE 128 Query: 128 --------------------------------------AXPLFGAGDLPLVYRPHPYVDQ 149 PL L PHP DQ Sbjct: 129 AVRLELLVRTPGELEEMLLNGAIQVALGYFWRRVTALHYTPLMLERQLAYCAPPHPLFDQ 188 Query: 150 ------------ALATEGYARGPD------------AGGLEAIGLLVATGCYLGILPVHY 185 A A Y P+ G +EA+ +L+ +G +LG LP Sbjct: 189 PGEIEPEQAADYAWAWRDYPVPPEHLPLQQRNIMAVTGNMEAMSILILSGQHLGYLPEEM 248 Query: 186 VQLLGKRYALRARSDGP-SYHHQICAVTESSRPSTYRADLFLDILR 230 + R +RA + +Y I VT SR FLD L+ Sbjct: 249 GRQYEARGQMRALNRAKLAYDVGISVVTHRSRAREPIVAAFLDDLK 294 >gi|300314076|ref|YP_003778168.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 3/100 (3%) Query: 10 DLRSLRVFCNAAQAGGFAAAEKRLHMSKASISRHVREVEERLGVRLCERGPAGFKLTPEG 69 DL LR F + A G A +LH+++ ++S ++ ++E LG++L R AG LT EG Sbjct: 2 DLTQLRAFISVAHEGNLTRAADKLHLTQPAVSLQIKGLQESLGLQLFNRSAAGMVLTAEG 61 Query: 70 EVALKLASDALRSLERIR---SEIDAVHGVLSGSLSIGIV 106 L LA L ++ +R ++ + G LSGSL+IG + Sbjct: 62 NKLLPLAERVLADVQELRRHAADFRSSTGELSGSLAIGTI 101 >gi|300313689|ref|YP_003777781.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 61.2 bits (147), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 53/95 (55%) Query: 13 SLRVFCNAAQAGGFAAAEKRLHMSKASISRHVREVEERLGVRLCERGPAGFKLTPEGEVA 72 SLR F + G AA +RL ++ +++SR + ++EE GV L ER G LTP GEV Sbjct: 5 SLRYFYQVGRTGSLTAAAERLDVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPAGEVL 64 Query: 73 LKLASDALRSLERIRSEIDAVHGVLSGSLSIGIVE 107 + A L +E++ +E+ +H V G +++ E Sbjct: 65 MAYARRNLLEMEQVLAEVRGLHAVGQGVITLACSE 99 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 51/100 (51%) Query: 6 FDERDLRSLRVFCNAAQAGGFAAAEKRLHMSKASISRHVREVEERLGVRLCERGPAGFKL 65 FD L S+ +FC AA+ G F AA + L ++ AS+SR + +E RLGVRL R +L Sbjct: 4 FDPVQLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQIRL 63 Query: 66 TPEGEVALKLASDALRSLERIRSEIDAVHGVLSGSLSIGI 105 T EGE+ AL + + V SG L I + Sbjct: 64 TREGELYRDQCQQALEQIADAERILTGQQKVPSGLLRISV 103 >gi|300313746|ref|YP_003777838.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 58.5 bits (140), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 48/95 (50%) Query: 11 LRSLRVFCNAAQAGGFAAAEKRLHMSKASISRHVREVEERLGVRLCERGPAGFKLTPEGE 70 L ++R F +AG F A L M A++S+ VRE+E LGVRL +R +TPEG Sbjct: 4 LLAIRAFARVVEAGNFTRAADSLDMPNATLSKLVRELEAHLGVRLLQRTTRRVSVTPEGL 63 Query: 71 VALKLASDALRSLERIRSEIDAVHGVLSGSLSIGI 105 + +R LE I + +A G G L I + Sbjct: 64 DYYEKTGRLVRDLEDIDTSFNAARGNPRGKLRIDV 98 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 764,161 Number of extensions: 32982 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 175 Number of HSP's successfully gapped: 11 Length of query: 239 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 157 Effective length of database: 1,231,600 Effective search space: 193361200 Effective search space used: 193361200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)