BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0017.p (111 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/sign... 103 3e-24 gi|300310886|ref|YP_003774978.1| amino acid ABC transporter peri... 92 1e-20 gi|300311590|ref|YP_003775682.1| amino acid ABC transporter/sign... 91 3e-20 gi|300313169|ref|YP_003777261.1| amino acid transport periplasmi... 69 8e-14 gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/sign... 69 1e-13 >gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 103 bits (258), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 46/106 (43%), Positives = 76/106 (71%), Gaps = 1/106 (0%) Query: 1 MQDEELSRLAPG-AVIKRFEDNNGTVSAFLAGQAQMFATGTAVAATIKTKDPSVSMDLKV 59 ++D EL+++ P A +KR+EDNN T+S+FL+GQ Q+ ATG VAA I ++P + K Sbjct: 150 VEDLELTKIVPASATVKRYEDNNSTISSFLSGQVQLVATGNVVAAAIIARNPPKKPETKF 209 Query: 60 ILSNSPCYIGVLKGEPQLVARLNEIIREAKSNGAIDEMSKKWLGAP 105 ++ +SPC+IG+ KGE +L +++ I+ E+K +G++ +S+KWLG P Sbjct: 210 LIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGSLSAISQKWLGMP 255 >gi|300310886|ref|YP_003774978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 91.7 bits (226), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 44/98 (44%), Positives = 66/98 (67%), Gaps = 3/98 (3%) Query: 14 VIKRFEDNNGTVSAFLAGQAQMFATGTAVAATIKTKDPSVSMDLKVILSNSPCYIGVLKG 73 VIKR+EDNNG ++A+++GQ Q+ TG VA + K P+ LK I++ S CY+G+ KG Sbjct: 164 VIKRYEDNNGLIAAYVSGQVQLVGTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKG 223 Query: 74 EPQLVARLNEIIREAKSNGAIDEMSKKWLGAPAGPLPE 111 EP L+A++NE + +K +G ++ + KKWL PLPE Sbjct: 224 EPALMAKVNEALTASKKSGELNGIVKKWLNV---PLPE 258 >gi|300311590|ref|YP_003775682.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 90.5 bits (223), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 1/106 (0%) Query: 1 MQDEELSRLAP-GAVIKRFEDNNGTVSAFLAGQAQMFATGTAVAATIKTKDPSVSMDLKV 59 QD +L+ AP A IKR+EDNN +SA+++GQ Q+ TG VA + K P+ LK Sbjct: 152 FQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQLVGTGDFVAYALAEKAPNNKPVLKY 211 Query: 60 ILSNSPCYIGVLKGEPQLVARLNEIIREAKSNGAIDEMSKKWLGAP 105 I+ S C +G+ KGEP L+A++NE + AK +G ++ + +KWL P Sbjct: 212 IIQESACNVGLNKGEPALLAKVNEALTAAKKSGELNGIVQKWLNVP 257 >gi|300313169|ref|YP_003777261.1| amino acid transport periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 69.3 bits (168), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 1/106 (0%) Query: 1 MQDEELSRLAP-GAVIKRFEDNNGTVSAFLAGQAQMFATGTAVAATIKTKDPSVSMDLKV 59 MQD L+ +AP G I RF+D+ +A ++GQ T ++A+ I ++PS +++ K Sbjct: 153 MQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCTPNSLASAIAKQNPSKNLETKF 212 Query: 60 ILSNSPCYIGVLKGEPQLVARLNEIIREAKSNGAIDEMSKKWLGAP 105 + + P IG+ KGEP L LNE I NG + + ++W+G+P Sbjct: 213 AIKDIPYAIGLRKGEPALEKWLNEWISANLKNGKLPGIYQQWVGSP 258 >gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Herbaspirillum seropedicae SmR1] Length = 269 Score = 68.6 bits (166), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 66/107 (61%), Gaps = 1/107 (0%) Query: 3 DEELSRLAPG-AVIKRFEDNNGTVSAFLAGQAQMFATGTAVAATIKTKDPSVSMDLKVIL 61 D+EL+++AP A I RF+D+ +++A ++GQA ++AT + + K+PS ++ K+ L Sbjct: 156 DQELTKIAPSSATITRFDDDATSMTAMVSGQADIWATSPMLLKVVNQKNPSRDIESKLTL 215 Query: 62 SNSPCYIGVLKGEPQLVARLNEIIREAKSNGAIDEMSKKWLGAPAGP 108 + +G+ KGEP+L +++ IR SNG ++ + KK+ A P Sbjct: 216 KANLLAVGLRKGEPRLKEKIDGWIRTNLSNGELNTIYKKYHEAELPP 262 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.130 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 341,026 Number of extensions: 11264 Number of successful extensions: 41 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 6 Length of query: 111 Length of database: 1,619,870 Length adjustment: 73 Effective length of query: 38 Effective length of database: 1,274,215 Effective search space: 48420170 Effective search space used: 48420170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 124 (52.4 bits)