BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0014.p
         (193 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310316|ref|YP_003774408.1| hypothetical protein Hsero_0983...   260   5e-71

>gi|300310316|ref|YP_003774408.1| hypothetical protein Hsero_0983
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score =  260 bits (665), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 126/188 (67%), Positives = 149/188 (79%)

Query: 4   PTFPDDDTVAALTRAWVAEAVIGLNLCPFAKSVYVKDQIRYVVSHADNEADLAQQLLTEL 63
           P  P DD V ALTRAW+ +AVIGLNLCPFAKSV+VK+Q+RY VS   +   +A  L  EL
Sbjct: 11  PAAPSDDQVVALTRAWLEQAVIGLNLCPFAKSVHVKNQVRYRVSKGQDWDGVAADLEEEL 70

Query: 64  QHLQAADPELLDTTLLIHPRVLQDFYDYNSFLDVADQVLEDAGLDGVIQIASFHPQYQFA 123
             L  ADPE +DTTLLI P    DF++YN FLD AD++LE   LDG +QIASFHP+YQFA
Sbjct: 71  ALLAKADPEHIDTTLLILPLAFADFHEYNDFLDWADRILERMRLDGELQIASFHPEYQFA 130

Query: 124 DAGPDDIDNYTNRSPFPVLHLLRESSIDRAVAAFPEASAIFERNIATMRDLGLNGWNRLA 183
           DAGPDDI+NY+NRSPFP+LHLLRESSIDRAVAA+P+AS IFERN+AT+R+LGL GWN L 
Sbjct: 131 DAGPDDIENYSNRSPFPILHLLRESSIDRAVAAYPDASTIFERNMATLRELGLTGWNMLP 190

Query: 184 FVVSKKQH 191
           FVV+ KQ 
Sbjct: 191 FVVTNKQR 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 610,021
Number of extensions: 23606
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 113
Effective length of database: 1,241,070
Effective search space: 140240910
Effective search space used: 140240910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)