BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0013.p
         (419 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310315|ref|YP_003774407.1| cysteine synthase B protein [He...   452   e-128

>gi|300310315|ref|YP_003774407.1| cysteine synthase B protein
           [Herbaspirillum seropedicae SmR1]
          Length = 300

 Score =  452 bits (1162), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/298 (76%), Positives = 250/298 (83%), Gaps = 3/298 (1%)

Query: 1   MPYLTIEDTIGNTPLIQLQRLGGEDAKRRNNIILGKMEGNNPAGSVKDRAALSMIRRAEE 60
           M Y TIE TIGNTPLI L R+GGE+AKRRNN+ILGK+EGNNPAGSVKDRAA SMI RAE 
Sbjct: 1   MSYPTIESTIGNTPLILLPRIGGEEAKRRNNLILGKLEGNNPAGSVKDRAAFSMITRAEA 60

Query: 61  RGQIKPGDTLIEATSGNTGIALAMVAALRGYKMVLLMPENLSEERRQSMAAYGAKIVLTP 120
           RGQIKPGDTLIEATSGNTGIALAMVAA+RGYKM+LLMPENLSEERRQSMAAYGAKIVLTP
Sbjct: 61  RGQIKPGDTLIEATSGNTGIALAMVAAMRGYKMILLMPENLSEERRQSMAAYGAKIVLTP 120

Query: 121 KSGGMEYARDLAEQMQKEGQGLILDQFANGDNPQAHYETTGPELWRDTEGRITHFVSAMG 180
           KSGGMEYARDLAEQMQK G+GLILDQFAN DNP AHYETTGPE+WRDT+G ITHFVSAMG
Sbjct: 121 KSGGMEYARDLAEQMQKNGEGLILDQFANPDNPLAHYETTGPEIWRDTKGSITHFVSAMG 180

Query: 181 TTGTIMGVSRYLKEQNPEIQIIGAQPEEGSSIPGIRKWPDAYLPKIYEKPRVDQLEYVSQ 240
           TTGTIMGV++YLKEQN ++QI+GAQPEEGSSIPGIRKWP+AYLPKI+++ RVDQ+E VSQ
Sbjct: 181 TTGTIMGVAQYLKEQNAQVQIVGAQPEEGSSIPGIRKWPEAYLPKIFDRSRVDQIESVSQ 240

Query: 241 AAAENMARKLVAFLFHAWCCRRAWLRLELLVADAEFL--ATIAHQFAQFADRQFADFV 296
           A AENMARKL A     +C   A    E+ V  +  L  ATI        DR  +  V
Sbjct: 241 ADAENMARKL-AVTEGVFCGISAAGACEVAVRLSHQLENATIVFIVCDRGDRYLSTGV 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,197,421
Number of extensions: 46693
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 2
Length of query: 419
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 331
Effective length of database: 1,203,190
Effective search space: 398255890
Effective search space used: 398255890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)