BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0011.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310313|ref|YP_003774405.1| acyl-CoA dehydrogenase [Herbasp...   273   9e-75
gi|300309596|ref|YP_003773688.1| acyl-CoA dehydrogenase [Herbasp...    54   7e-09

>gi|300310313|ref|YP_003774405.1| acyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 550

 Score =  273 bits (697), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 140/180 (77%), Positives = 152/180 (84%)

Query: 1   MRHALVQAIHHARHRSAFGKHLADQPLMRNVLADLALESEAATLLMLRLASAFEAPADPL 60
           MR ALVQAIHHARHRSAFG+ LA+QPLMR VLADLALESEAAT+LMLR+A AF+AP DPL
Sbjct: 312 MRQALVQAIHHARHRSAFGRRLAEQPLMRAVLADLALESEAATMLMLRVAHAFDAPDDPL 371

Query: 61  QRAWRRIVTPAAKFWICKRALEFTGECMEVWGGNGYVETGPMARMYREAPVNSIWEGSGN 120
           QRAW+RI+TPAAKFWICKR LEFTGECMEVWGGNGYVET PMAR+YREAPVNSIWEGSGN
Sbjct: 372 QRAWKRIITPAAKFWICKRTLEFTGECMEVWGGNGYVETAPMARLYREAPVNSIWEGSGN 431

Query: 121 VMCLDVLRAMEREPDACLLLLDELQQVADGHEVLQAPLHALKQMMTLPPEQREMLARRLV 180
           VMCLDVLRAM RE     LLL EL   A GH  L+  + ALKQM+  P E+RE  ARRLV
Sbjct: 432 VMCLDVLRAMARETQGLALLLLELDDAAAGHPALRQQVDALKQMLAAPEEEREAGARRLV 491


>gi|300309596|ref|YP_003773688.1| acyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 596

 Score = 54.3 bits (129), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 2   RHALVQAIHHARHRSAFGKHLADQPL--------MRNVLADLALESEAA----TLLMLRL 49
           ++ALV A    + RS  G   AD+P         +R +L      +E      + + L L
Sbjct: 314 QNALVYAKDRLQMRSLSGIKAADKPADPIIVHPDVRRMLLTAKAFAEGGRAFTSYVALEL 373

Query: 50  ASAFEAPADPLQRAWRRIV---TPAAKFWICKRALEFTGECMEVWGGNGYVETGPMARMY 106
                 P + +++    IV   TP  K ++   A   T EC++V+GG+GY+    M +  
Sbjct: 374 DKELTHPDEQVRKDSADIVALLTPVVKAFLTDNAWMATSECLQVYGGHGYIAEWGMEQYV 433

Query: 107 REAPVNSIWEGSGNVMCLDVL 127
           R+A +N I+EG+  +  LD+L
Sbjct: 434 RDARINMIYEGTNTIQSLDLL 454


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 620,814
Number of extensions: 24820
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 3
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)