BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0005.p
         (167 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313111|ref|YP_003777203.1| TRAP-type C4-dicarboxylate tran...   182   1e-47
gi|300310440|ref|YP_003774532.1| TrapT dctQ-M fusion permease, d...    98   3e-22

>gi|300313111|ref|YP_003777203.1| TRAP-type C4-dicarboxylate
           transport system dctQ-M fusion permease large permease
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score =  182 bits (461), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/149 (75%), Positives = 128/149 (85%), Gaps = 5/149 (3%)

Query: 1   MPAVIATIAIGIVCWFRARREPMPDVKRASIGVIGKTLIAAIPALALPMLIRVAVVVGL- 59
           MPA IATIAI +VCW RARREPMPDVKRA + +I K LIAAIPALALPMLIRVAV+ G+ 
Sbjct: 379 MPAAIATIAIAVVCWMRARREPMPDVKRAPLSLIVKALIAAIPALALPMLIRVAVIEGVA 438

Query: 60  ----VMHAFXAYTIVVGLVMHAFLKHLDFKRIYPMLVEAATLSGAILLIIGMATSMAWAL 115
               V     AYT+VVGL+MH F++HL FKR+YPML+E+A LSGAILLIIGMAT+MAWAL
Sbjct: 439 TATEVATIGVAYTVVVGLIMHLFMRHLSFKRLYPMLIESAALSGAILLIIGMATAMAWAL 498

Query: 116 TQSGFSAKLVSLMQGVPGGGLGFLLITIV 144
           TQSGFSAKLV+LMQGVPGGG+GFLLITIV
Sbjct: 499 TQSGFSAKLVALMQGVPGGGVGFLLITIV 527


>gi|300310440|ref|YP_003774532.1| TrapT dctQ-M fusion permease,
           dicarboxylate transport protein [Herbaspirillum
           seropedicae SmR1]
          Length = 618

 Score = 98.2 bits (243), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 98/148 (66%), Gaps = 9/148 (6%)

Query: 1   MPAVIATIAIGIVCWFRARREPMPDVKRASIGVIGKTLIAAIPALALPMLIRVAVVVGL- 59
           MP ++  + + I+  +R+  E M  ++RA   V+ +TLI A+PAL LP+LIR AVV G+ 
Sbjct: 374 MPGIVLAVLLAILARWRSA-EIMEGIQRAPGRVVLRTLIIALPALLLPILIRTAVVEGVA 432

Query: 60  ----VMHAFXAYTIVVGLVMHAFLKHLDFKRIYPMLVEAATLSGAILLIIGMATSMAWAL 115
               V     AY++V GL+++   +  D+KR+YPMLV+ A LSGAIL IIG AT M+WAL
Sbjct: 433 TATEVSTIGIAYSVVAGLLVY---RKFDWKRLYPMLVDTAALSGAILFIIGTATGMSWAL 489

Query: 116 TQSGFSAKLVSLMQGVPGGGLGFLLITI 143
           TQSGFS  L   M  VPGG  GFLL++I
Sbjct: 490 TQSGFSHALAEAMTSVPGGKYGFLLVSI 517


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.140    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 461,974
Number of extensions: 15604
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,245,805
Effective search space: 109630840
Effective search space used: 109630840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)