BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0004.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313111|ref|YP_003777203.1| TRAP-type C4-dicarboxylate tran...   309   1e-85
gi|300310440|ref|YP_003774532.1| TrapT dctQ-M fusion permease, d...   135   1e-33

>gi|300313111|ref|YP_003777203.1| TRAP-type C4-dicarboxylate
           transport system dctQ-M fusion permease large permease
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score =  309 bits (791), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 150/181 (82%), Positives = 168/181 (92%)

Query: 1   VLLAGVIYRYALHDPLIWSDELASTLFIWLSMLGAVLALDRGEHMRLTAIVNKLSDKWRV 60
           VLL GVIYRYALHDPL+WSDELAS LFIWLSMLGAVLALDRGEHMRLTAI+NK S+K R+
Sbjct: 46  VLLTGVIYRYALHDPLVWSDELASILFIWLSMLGAVLALDRGEHMRLTAIINKCSEKGRI 105

Query: 61  WLETVAALIVCIFVLMIIHPAVDHASEQMAITTPALEIPDGLRAAALPVGAILMFLAAIA 120
           WLETVAAL+VCIFVLM+IHPAVDHA EQM ITTPALEIPDGLRAAALPVGAILM LAA++
Sbjct: 106 WLETVAALVVCIFVLMVIHPAVDHAVEQMPITTPALEIPDGLRAAALPVGAILMLLAAVS 165

Query: 121 RMASRSSVKQVLSAVAVVAVIGAVLWISKPALLAMGNYNLIVFFVVLIGVCVAGGIPIAF 180
           RMA+ ++++ +LSA+AVVAVIG  LW++KP LL MGNYNLIVFFV+LIGVCVAGGIPIAF
Sbjct: 166 RMAAMTTMRLLLSALAVVAVIGGALWLAKPMLLGMGNYNLIVFFVLLIGVCVAGGIPIAF 225

Query: 181 A 181
           A
Sbjct: 226 A 226


>gi|300310440|ref|YP_003774532.1| TrapT dctQ-M fusion permease,
           dicarboxylate transport protein [Herbaspirillum
           seropedicae SmR1]
          Length = 618

 Score =  135 bits (341), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 125/180 (69%), Gaps = 1/180 (0%)

Query: 1   VLLAGVIYRYALHDPLIWSDELASTLFIWLSMLGAVLALDRGEHMRLTAIVNKLSDKWRV 60
           VLLAGVI R+  ++P+ W+DELAS LF+WL+ LGA +AL RG HMR T +V  +S++ + 
Sbjct: 42  VLLAGVIMRFIFNNPIPWADELASILFLWLANLGAAVALRRGTHMRTTVLVGFMSERGKA 101

Query: 61  WLETVAALIVCIFVLMIIHPAVDHASEQMAITTPALEIPDGLRAAALPVGAILMFLAAIA 120
           W E +A +  C+ +L+++HP  ++A ++M + TPAL  P+ +RAAA+ VGA LM   ++ 
Sbjct: 102 WAEALAIIAPCVMLLILMHPMWEYAEDEMFVQTPALGWPNTVRAAAVAVGAALMIALSLL 161

Query: 121 RMASRSSVKQVLSAVAVVAVIGAVLWISKPALLAMGNYNLIVFFVVLIGVCVAGGIPIAF 180
           R+ SR  +  ++  +A++AV+   +++    L A+GN+NL+VFF +++ V V  GIPIAF
Sbjct: 162 RI-SRQKLVDLVGVLALLAVVAGAMYLGAAWLQAIGNWNLVVFFGLVLAVSVLLGIPIAF 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 544,783
Number of extensions: 18580
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)