BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0033.p
         (73 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313930|ref|YP_003778022.1| methylmalonate-semialdehyde deh...   117   2e-28
gi|300314075|ref|YP_003778167.1| methylmalonate-semialdehyde deh...   106   4e-25
gi|300312371|ref|YP_003776463.1| methylmalonate-semialdehyde deh...    79   5e-17

>gi|300313930|ref|YP_003778022.1| methylmalonate-semialdehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 497

 Score =  117 bits (293), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/69 (82%), Positives = 62/69 (89%)

Query: 1   MEKDAEMGPVVTAAAKARIEGLIGKGVEEGATLVVDGRGFKVPGRENGFFVGGTLFDHVT 60
           M   AEMGPVVTAAAK RIEGLIG+GVEEGATLVVDGRG++VPG E GFFVGGTL DHVT
Sbjct: 314 MAAGAEMGPVVTAAAKERIEGLIGRGVEEGATLVVDGRGYQVPGFEKGFFVGGTLLDHVT 373

Query: 61  PEMSIYKEE 69
           PEM++YKEE
Sbjct: 374 PEMTVYKEE 382


>gi|300314075|ref|YP_003778167.1| methylmalonate-semialdehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 503

 Score =  106 bits (264), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 1   MEKDAEMGPVVTAAAKARIEGLIGKGVEEGATLVVDGRGFKVPGRENGFFVGGTLFDHVT 60
           ME DAEMGP+VTAA KA++EG I  GV+ GA L+VDGRG KVPG E GFF+GGTLFDHVT
Sbjct: 320 MEDDAEMGPLVTAAHKAKVEGYIQSGVDAGAKLLVDGRGLKVPGHEEGFFIGGTLFDHVT 379

Query: 61  PEMSIYKEE 69
            EM IY+EE
Sbjct: 380 TEMKIYQEE 388


>gi|300312371|ref|YP_003776463.1| methylmalonate-semialdehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score = 79.3 bits (194), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 50/68 (73%)

Query: 2   EKDAEMGPVVTAAAKARIEGLIGKGVEEGATLVVDGRGFKVPGRENGFFVGGTLFDHVTP 61
           ++ A++GP+V+ AAK R+E LI  GVE+GA L++DGR  KV G ENG FVG T+F  V P
Sbjct: 319 DRKADVGPLVSKAAKERVERLIASGVEQGAKLLLDGRNCKVAGSENGNFVGPTVFTGVKP 378

Query: 62  EMSIYKEE 69
           EM IY +E
Sbjct: 379 EMDIYTQE 386


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 246,667
Number of extensions: 9514
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 3
Length of query: 73
Length of database: 1,619,870
Length adjustment: 44
Effective length of query: 29
Effective length of database: 1,411,530
Effective search space: 40934370
Effective search space used: 40934370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)