BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0032.p
         (130 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC t...   106   5e-25
gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t...    54   4e-09

>gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC
          transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score =  106 bits (265), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 57/58 (98%)

Query: 1  MNIYLLQIANGIGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQLGEMGV 58
          MNIYLLQIANG+GIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQ+ ++G+
Sbjct: 1  MNIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQVTDLGL 58


>gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC
          transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 628

 Score = 53.9 bits (128), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 35/48 (72%)

Query: 6  LQIANGIGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQL 53
          +Q+ NG+      F++A GLS++FG+ R VNF+HG+F++LG YL + L
Sbjct: 8  VQLLNGLADASAMFMVAAGLSLIFGVTRIVNFAHGSFYMLGLYLAYSL 55


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.146    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 343,435
Number of extensions: 12294
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 6
Length of query: 130
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 55
Effective length of database: 1,264,745
Effective search space: 69560975
Effective search space used: 69560975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 125 (52.8 bits)