BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0030.p
         (224 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC t...   437   e-124
gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC t...    62   5e-11
gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC t...    57   1e-09

>gi|300313931|ref|YP_003778023.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 397

 Score =  437 bits (1124), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/223 (93%), Positives = 216/223 (96%)

Query: 1   VFGDGLLSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAMAAKPDVLLLLNFGSQSSD 60
           VFG+GLLSAAK IFKEKGIEHVGNSYHSL EKEFSGYLTNA+AAKPDVLLLLNFGSQSSD
Sbjct: 175 VFGEGLLSAAKNIFKEKGIEHVGNSYHSLTEKEFSGYLTNAIAAKPDVLLLLNFGSQSSD 234

Query: 61  TLRQAVSFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVKTV 120
           TLRQAVSFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVK V
Sbjct: 235 TLRQAVSFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVKLV 294

Query: 121 NDALKIDPNYSLAGSYICTKIVLDAIIKANSTDPKAVIAAMEGMKYEGLTGTEEIRKGDH 180
           ND LKIDPNYSLAGSYICTKI+LDAIIKANSTDPKAVIAAMEGMKYEGLTG+EEIRKGDH
Sbjct: 295 NDNLKIDPNYSLAGSYICTKIILDAIIKANSTDPKAVIAAMEGMKYEGLTGSEEIRKGDH 354

Query: 181 QVIKNYYLLKGKAKSKMRNKNDYADIISSGKSFLALDKTMCKL 223
           QVIKNYYLLKGKAK+KM NKNDYADI+SSGKSFL L+KT CKL
Sbjct: 355 QVIKNYYLLKGKAKAKMANKNDYADIVSSGKSFLPLEKTQCKL 397


>gi|300312372|ref|YP_003776464.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 410

 Score = 61.6 bits (148), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 92/228 (40%), Gaps = 8/228 (3%)

Query: 2   FGDGLLSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAMAAKPDVLLLLNFGSQSSDT 61
           FG  L   A  + K  G   VG+  H L   +FS +L  A A+K  V+ L + G+   + 
Sbjct: 184 FGHSLEKDASDVVKANGGTVVGSVRHPLNASDFSSFLLQAQASKAQVIGLADGGTDVVNA 243

Query: 62  LRQAVSFGMKNNCTILMAWASGLEQFETLGADICDG-VYFGAQYWHAIDAPFNKEFVKTV 120
           ++QA SF +      L+A    L     LG +   G VY    YW   +    + F K  
Sbjct: 244 IKQARSFAVGGKDQRLVALLVFLSDVHALGLEAAQGLVYTDGFYWDYDEQ--TRAFSKRF 301

Query: 121 NDALK-IDPNYSLAGSYICTKIVLDAIIKANSTDPKAVIAAMEGMKYEGLTGTEEIRKGD 179
               K I P    AG Y      L A   A ++D K V   M  +            + D
Sbjct: 302 ESQFKNIKPTMVQAGVYSSVYQFLKARAAAKTSDWKVVAQKMREIPIADAVMRNASIRPD 361

Query: 180 HQVIKNYYLLKGKAKSKMRNKNDY---ADIISSGKSFLALDKTMCKLT 224
            +VI + YL + K  ++ +   DY     +I + ++F  +D   C L 
Sbjct: 362 GRVIHDMYLYQVKTPAESKGPWDYLKLLSVIPAQQAFRPMDAA-CPLV 408


>gi|300312339|ref|YP_003776431.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 404

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 6/225 (2%)

Query: 2   FGDGLLSAAKAIFKEKGIEHVGNSYHSLAEKEFSGYLTNAMAAKPDVLLLLNFGSQSSDT 61
           FG  L +   A+ K  G   VG+  H     + S +L  A A+K  +L L N G  + ++
Sbjct: 180 FGHSLANDTSAVVKASGGTVVGSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNS 239

Query: 62  LRQAVSFGMKNNCTILMAWASGLEQFETLGADICDGVYFGAQYWHAIDAPFNKEFVKTVN 121
           ++ A  FG+      L+     +     LG    +G+     ++   D P +++F +   
Sbjct: 240 IKAAKEFGVTKTMK-LVGLLMVINDIHALGLANAEGLMMTDSWYWDKDEP-SRKFAERFF 297

Query: 122 DALKIDPNYSLAGSYICTKIVLDAIIKANSTDPKAVIAAMEGMKYEGLTGTEEIRKGDHQ 181
             +K  P+   A +Y  T   L A+    + D   V+A ++  + +       IR  D +
Sbjct: 298 QKMKKMPSTHQAAAYSATTTYLKAVQAIGTDDSTKVMAQLKKTRIDDFYNKGSIR-ADGR 356

Query: 182 VIKNYYLLKGKAKSKMRNKNDY---ADIISSGKSFLALDKTMCKL 223
            I + YL + K+ ++ +   DY    + I   ++F ++  + C L
Sbjct: 357 NIHDMYLYQVKSPAESKKPWDYLKLLETIPGEQAFTSVADSKCSL 401


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 627,015
Number of extensions: 23010
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 4
Length of query: 224
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,231,600
Effective search space: 174887200
Effective search space used: 174887200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)