BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0027.p (264 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 437 e-124 gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPa... 189 2e-49 gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPa... 183 1e-47 gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 175 4e-45 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 167 6e-43 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 437 bits (1125), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/254 (84%), Positives = 228/254 (89%) Query: 1 MSTSILKAVNVTKRYGKFTAVNNITLDILRGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 MS IL+AVNVTKRYGKFTAVN ITLDI GTVHSVIGPNGAGKTTLFHTLTGTTPITEG Sbjct: 1 MSRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 Query: 61 SILVEGEEVSHLPGYKRVRKGLARSFQVTSLFPNLSVRENLRLAAQGTRPAQALNPWKRP 120 SILVEGEEV+HLPG +RV+KGLARSFQVTSLFPNLSVRENLRLAAQG P ALNPWKR Sbjct: 61 SILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRA 120 Query: 121 ELLRQACDVAEQLVVRLSLQGVADRLSSELSHGQQRRLEVGMAMAGQPKVIFLDEPTSGM 180 E AC +A++L+ RLSLQ VA R +ELSHGQQRRLEVGMAMAG+PKVIFLDEPTSGM Sbjct: 121 EQFSAACALADELLARLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 Query: 181 GIDDIADMKKLIHSLRDNYTVVLIEHNMDIVMDISDSITVMQQGQILAQGKPDEIRNDER 240 GIDDIA+MK+LIH LR +YTVVLIEHNMDIVMDISD ITVMQ GQILAQGKP EIR+DER Sbjct: 181 GIDDIAEMKQLIHGLRRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSDER 240 Query: 241 VRRAYLGSMITGGK 254 VRRAYLGSMITGGK Sbjct: 241 VRRAYLGSMITGGK 254 >gi|300314073|ref|YP_003778165.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 189 bits (480), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 157/248 (63%), Gaps = 1/248 (0%) Query: 1 MSTSILKAVNVTKRYGKFTAVNNITLDILRGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 M+ IL+ N+TK + FTAV+ + L I RG +H++IGPNGAGKTT F+ LT T G Sbjct: 1 MTDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSG 60 Query: 61 SILVEGEEVSHLPGYKRVRKGLARSFQVTSLFPNLSVRENLRLAAQGTRPAQALNPWKRP 120 IL G +++ + R+G+ RSFQ++++FP++SV EN+R+ Q + + + WK Sbjct: 61 QILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQ-RKLGTSFHFWKNG 119 Query: 121 ELLRQACDVAEQLVVRLSLQGVADRLSSELSHGQQRRLEVGMAMAGQPKVIFLDEPTSGM 180 E L+Q + A QL+ + L A + +L +G++R LE+ +A +P+++ LDEPT GM Sbjct: 120 ESLKQLDERAMQLLEEVDLTSFAHTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGM 179 Query: 181 GIDDIADMKKLIHSLRDNYTVVLIEHNMDIVMDISDSITVMQQGQILAQGKPDEIRNDER 240 G +D+ + LI + T++++EHNM ++ I D I+V+Q+G +LA+G +E+ + + Sbjct: 180 GHEDVDRVTALIKKVSAGRTILMVEHNMSVIAGICDRISVLQRGALLAEGSYEEVSRNPQ 239 Query: 241 VRRAYLGS 248 V AY+GS Sbjct: 240 VMEAYMGS 247 >gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 183 bits (464), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 103/235 (43%), Positives = 148/235 (62%), Gaps = 1/235 (0%) Query: 13 KRYGKFTAVNNITLDILRGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSILVEGEEVSHL 72 K YG A ++ L+I G VH++IGPNGAGKTTL L+G G I + G+ + Sbjct: 17 KNYGGLAATRDVDLEIAAGQVHAIIGPNGAGKTTLLSLLSGALAADAGEIHLFGQPMHGH 76 Query: 73 PGYKRVRKGLARSFQVTSLFPNLSVRENLRLAAQGTRPAQALNPWKRPELLRQACDVAEQ 132 RV GL RSFQ+TS+F LSV ENL++A Q + ++ + R A + A Sbjct: 77 AEQARVAAGLVRSFQITSVFDELSVLENLQVAVQRGQH-RSYGFFHASAGDRAAREAAMT 135 Query: 133 LVVRLSLQGVADRLSSELSHGQQRRLEVGMAMAGQPKVIFLDEPTSGMGIDDIADMKKLI 192 + R+ L+ V +LSS+LSHG +RRL+VG+A+A P+V+ +DEP +GMG ++ DM LI Sbjct: 136 VARRVGLEKVVHQLSSQLSHGARRRLDVGLAIACSPRVLLMDEPMAGMGHEESGDMIALI 195 Query: 193 HSLRDNYTVVLIEHNMDIVMDISDSITVMQQGQILAQGKPDEIRNDERVRRAYLG 247 SL++ TVVL+EH+M+ V ++D +TV+ QG +LA G DEIR + V+ AYLG Sbjct: 196 QSLKEELTVVLVEHDMEAVFALADRMTVLVQGAVLATGSVDEIRANAEVKLAYLG 250 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 175 bits (443), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 149/245 (60%), Gaps = 3/245 (1%) Query: 4 SILKAVNVTKRYGKFTAVNNITLDILRGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSIL 63 + L+ ++KR+G F A ++I+L G H++IGPNGAGKTT + LTG + G + Sbjct: 10 TTLRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRVW 69 Query: 64 VEGEEVSHLPGYKRVRKGLARSFQVTSLFPNLSVRENLRLAAQGTRPAQALNPWKRPELL 123 GE+++ LP + RV++G+ R+FQ+ +LF L+V E++ LA Q R Q W + Sbjct: 70 FGGEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQ--YKWYQTVAS 127 Query: 124 R-QACDVAEQLVVRLSLQGVADRLSSELSHGQQRRLEVGMAMAGQPKVIFLDEPTSGMGI 182 + + D A L+ L L A+ L+ L++G+QR +E+ +A+A QPKV+ LDEP +G+ Sbjct: 128 QTEVVDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGIPS 187 Query: 183 DDIADMKKLIHSLRDNYTVVLIEHNMDIVMDISDSITVMQQGQILAQGKPDEIRNDERVR 242 + ++ ++I L T+V IEH+M +V ++ ITV+ G++L +G P EI D RV+ Sbjct: 188 AESRELFEVIAQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPRVK 247 Query: 243 RAYLG 247 YLG Sbjct: 248 EVYLG 252 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 167 bits (424), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 155/252 (61%), Gaps = 10/252 (3%) Query: 4 SILKAVNVTKRYGKFTAVNNITLDILRGTVHSVIGPNGAGKTTLFHTLTGTTPITEGSIL 63 ++L+ N++ R+G AV+ ++L + V ++IGPNGAGKTT+F+ ++G T G I+ Sbjct: 7 TMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIM 66 Query: 64 VEGEEVSHLPGYKRVRKGLARSFQVTSLFPNLSVRENLRLAAQGTRPAQALN------PW 117 ++G ++ P ++ ++GL R+FQ LF +++V ENL +A L+ + Sbjct: 67 LDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPAY 126 Query: 118 KRPELLRQACDVAEQLVVRLSLQGVADRLSSELSHGQQRRLEVGMAMAGQPKVIFLDEPT 177 ++ E ++A A + +L L +A+R + LS+G QRR+E+ M +P+++ LDEP Sbjct: 127 RKSE--QEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPA 184 Query: 178 SGMGIDDIADMKKLIHSLRDNY--TVVLIEHNMDIVMDISDSITVMQQGQILAQGKPDEI 235 +G+ + ++ +LI LR + V+LIEH+M ++M ISD I VM+ G+ + G P+++ Sbjct: 185 AGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQV 244 Query: 236 RNDERVRRAYLG 247 R+DERV +AYLG Sbjct: 245 RSDERVIKAYLG 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 741,509 Number of extensions: 29079 Number of successful extensions: 518 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 288 Number of HSP's successfully gapped: 138 Length of query: 264 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 181 Effective length of database: 1,226,865 Effective search space: 222062565 Effective search space used: 222062565 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)