BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0025.p
         (288 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313936|ref|YP_003778028.1| amidohydrolase [Herbaspirillum ...   384   e-108
gi|300312555|ref|YP_003776647.1| bifunctional OHCU decarboxylase...    87   1e-18
gi|300313822|ref|YP_003777914.1| N-carbamoyl-L-amino acid amidoh...    80   2e-16

>gi|300313936|ref|YP_003778028.1| amidohydrolase [Herbaspirillum
           seropedicae SmR1]
          Length = 419

 Score =  384 bits (986), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/206 (87%), Positives = 191/206 (92%)

Query: 1   MNTKTSITNLRIDGKRLWNSLMELGAIGATPKGGVCRLALTDLDRQGRDLVSSWAKQEGM 60
           M+  T I+ LRIDG RLW+SLMEL  IGAT KGGVCRLALTDLD+QGRDLVSSWA+ EGM
Sbjct: 1   MDMNTQISTLRIDGARLWDSLMELARIGATAKGGVCRLALTDLDKQGRDLVSSWARAEGM 60

Query: 61  SVTVDQIGNIFMRRAGRNNDLPPVVTGSHIDTQPTGGKFDGNYGVLAGMEVIRTLNQHNI 120
           SV VDQIGNIFMRR GRNN LPPV+TGSHIDTQPTGGKFDGNYGVLAG+EV+RTLNQHNI
Sbjct: 61  SVVVDQIGNIFMRRPGRNNALPPVMTGSHIDTQPTGGKFDGNYGVLAGIEVVRTLNQHNI 120

Query: 121 QTEAPIEVAVWTNEEGSRFVPVMMGSGVFCGAFTLEHAYSATDVDGKNVRDELARIGYIG 180
           QTEAPIEVAVWTNEEGSRFVPVMMGSGVFCGAFTL+HAY+ATDV+GK VRDEL RIGYIG
Sbjct: 121 QTEAPIEVAVWTNEEGSRFVPVMMGSGVFCGAFTLDHAYNATDVEGKKVRDELERIGYIG 180

Query: 181 EQKCGDHPIGAYYEAHIEQGPVLENA 206
           EQ CGDHPIGAYYEAHIEQGPVLENA
Sbjct: 181 EQVCGDHPIGAYYEAHIEQGPVLENA 206


>gi|300312555|ref|YP_003776647.1| bifunctional OHCU
           decarboxylase/N-carbamoyl-L-amino acid amidohydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 587

 Score = 87.0 bits (214), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 6/185 (3%)

Query: 23  ELGAIGATPKGGVCRLALTDLDRQGRDLVSSWAKQEGMSVTVDQIGNIFMRRAGRNNDLP 82
           E+GA+ +  +G +    LT+  ++    ++ W ++ GM V +D +GN+  R    +    
Sbjct: 189 EIGAL-SEEEGALTCTYLTETHQRTAAQIAQWMREAGMQVHIDAVGNVVGRYQSPHPQAK 247

Query: 83  PVVTGSHIDTQPTGGKFDGNYGVLAGMEVIRTLNQHNIQTEAPIEVAVWTNEEGSRFVPV 142
            ++TGSH DT   GGK+DG  G+L  + V++ L++        +EV  ++ EEG RF   
Sbjct: 248 TLLTGSHYDTVRNGGKYDGREGILLPIAVVKYLHERGETLPFHLEVIGFSEEEGVRFKST 307

Query: 143 MMGSGVFCGAFTLEHAYSATDVDGKNVRDELARIGY----IGEQKCGDHPIGAYYEAHIE 198
            +GS    G F +       D +   +R+ + + G+    I +       I AY E HIE
Sbjct: 308 FLGSNAITGHFDMA-LLDLRDKEDVTMRELIIQAGHDVAAIPQIARDPAEILAYVEVHIE 366

Query: 199 QGPVL 203
           QGPVL
Sbjct: 367 QGPVL 371


>gi|300313822|ref|YP_003777914.1| N-carbamoyl-L-amino acid
           amidohydrolase [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 7/179 (3%)

Query: 33  GGVCRLALTDLDRQGRDLVSSWAKQEGMSVTVDQIGNIFMRR--AGRNNDLPPVVTGSHI 90
           G + R  LT   +     ++ W ++ GM V  D  GN+  R   A  +   P  VTGSH 
Sbjct: 30  GMLTRTYLTPQHQAAAAALARWMEEAGMRVRRDNAGNVIGRYEAAPGHESAPSFVTGSHF 89

Query: 91  DTQPTGGKFDGNYGVLAGMEVIRTLNQHNIQTEAPIEVAVWTNEEGSRFVPVMMGSGVFC 150
           DT   GG +DGN G++  +  I   ++   +   PIEV  +  EEG RF   ++GS    
Sbjct: 90  DTVRNGGWYDGNLGIVLPLACIARWHRQGQRFAFPIEVIGFAEEEGVRFKATLLGSRTVA 149

Query: 151 GAFTLEHAYSATDVDGKNVRDELARIGYIGEQKCGDH----PIGAYYEAHIEQGPVLEN 205
           G F  +      D DG  +R  +   G   +    D      + A+ E HIEQGP+L N
Sbjct: 150 GTFD-QAVLENRDSDGVTMRAAIRAAGLDPDGIAADAWQPGSMAAFVEVHIEQGPLLLN 207


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 815,433
Number of extensions: 32598
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 3
Length of query: 288
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,222,130
Effective search space: 249314520
Effective search space used: 249314520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)