BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0018.p (329 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 362 e-101 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 166 2e-42 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 145 4e-36 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 134 9e-33 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 113 2e-26 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 362 bits (930), Expect = e-101, Method: Compositional matrix adjust. Identities = 173/257 (67%), Positives = 208/257 (80%) Query: 1 MKNYRIGVRLGIGFVAMLMLMAVMVGIGVWRLQGIGDATDDMVKNALQKERTANQWHAAI 60 MKN +IGVRL IGF+A+LMLMAVMV +GVWRL IGDATDDM + AL+KER A QWHAAI Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 61 KENGVRTFAVMRSEDAEFQKFFQAQIDNESKRISVVQKRVEAAVTSPEEKQLFDNVGKLR 120 KENGVRTFAVM+S+D FQ +FQ QID +S RIS +QK VEAA+T EEK+LFD VGKLR Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 121 TAYRTAREDIFKMKAAGKVEEAKQLTNTTLVKMMDEYANSVLKYANYQTQVIDDAAGDIY 180 AYR R+ IF +K AG A+++T+TTLVKMMD+YA+ VL+YA++Q QVID A I Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 181 QSYQSGRTLLLSLGLIELVLGGLLGWLLTLSITRPLNEAVSIAETVASGNLTSHIDGSGK 240 + Y+SGR++LL+LG IE+VLG L WLLT SITRPLN+AV+IAETVA+G+LTS ID S + Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 241 DETSKLLQALKTMNDNL 257 DET KLL ALKTMN NL Sbjct: 241 DETGKLLAALKTMNGNL 257 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/255 (38%), Positives = 149/255 (58%) Query: 3 NYRIGVRLGIGFVAMLMLMAVMVGIGVWRLQGIGDATDDMVKNALQKERTANQWHAAIKE 62 N IG RL +GF +L ++ GIG+WRL + AT +M+ L+ ER W+ + Sbjct: 6 NMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNLVA 65 Query: 63 NGVRTFAVMRSEDAEFQKFFQAQIDNESKRISVVQKRVEAAVTSPEEKQLFDNVGKLRTA 122 RT A+ +S D +F A++ SK QK+VEA +++PEEK LF +G+LR Sbjct: 66 GIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELRKL 125 Query: 123 YRTAREDIFKMKAAGKVEEAKQLTNTTLVKMMDEYANSVLKYANYQTQVIDDAAGDIYQS 182 Y ++R++I K KAAG EEA ++ + V Y +++ K ++Q + +DD A +I Sbjct: 126 YLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREIDAI 185 Query: 183 YQSGRTLLLSLGLIELVLGGLLGWLLTLSITRPLNEAVSIAETVASGNLTSHIDGSGKDE 242 RTL+L L + L+LG + LTL IT+PL+ AV ++ VA G+L+S I + +DE Sbjct: 186 AAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTSRDE 245 Query: 243 TSKLLQALKTMNDNL 257 T +LLQ+LK MN +L Sbjct: 246 TGQLLQSLKDMNQSL 260 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 145 bits (366), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 98/258 (37%), Positives = 139/258 (53%), Gaps = 3/258 (1%) Query: 3 NYRIGVRLGIGFVAMLMLMAVMVGIGVWRLQGIGDATDDMVKNALQKERTANQWHAAIKE 62 N +IG RL +GF +L +V+V + +WRLQGI ATD+M+ L KER + W+ I Sbjct: 6 NMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWYRTIHT 65 Query: 63 NGVRTFAVMRSEDAEFQKFFQAQIDNESKRISVVQKRVEAAVTSPEEKQLFDNVGKLRTA 122 + RT A+ +S D FF S+ + QK +EA + S +EK +F +G++R Sbjct: 66 SVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKD 125 Query: 123 YRTAREDIFKMKAAGKVEEAKQLTNTTLVKMMDEYANSVLKYANYQTQVIDDAAGDIYQS 182 Y R+ I K KA G+ EEA Q+ Y + + + Q ID A I Sbjct: 126 YIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAAHIQTV 185 Query: 183 YQSGRTLLLSLGLIELVLGGLLGWLLTLSITRPLNEAVSIAETVASGNLTSHID---GSG 239 Y+ R L+L+L +++VLG L L L ITRPL +AV +AE VA+G+LT ID + Sbjct: 186 YRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDERLAAR 245 Query: 240 KDETSKLLQALKTMNDNL 257 DET KL+ AL M NL Sbjct: 246 GDETGKLMHALHAMTGNL 263 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 134 bits (338), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 136/257 (52%) Query: 1 MKNYRIGVRLGIGFVAMLMLMAVMVGIGVWRLQGIGDATDDMVKNALQKERTANQWHAAI 60 +K+ RIG RLG GF +L+ V+ +G+WRL+ + T M+ L+ ER +QW+ + Sbjct: 2 IKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTLL 61 Query: 61 KENGVRTFAVMRSEDAEFQKFFQAQIDNESKRISVVQKRVEAAVTSPEEKQLFDNVGKLR 120 RT V++S D E + F + SK + K VE + S EEK++F + R Sbjct: 62 LIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVAR 121 Query: 121 TAYRTAREDIFKMKAAGKVEEAKQLTNTTLVKMMDEYANSVLKYANYQTQVIDDAAGDIY 180 + T R+ I+ K G + ++L V + +++ +++ ID + I Sbjct: 122 KQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQIQ 181 Query: 181 QSYQSGRTLLLSLGLIELVLGGLLGWLLTLSITRPLNEAVSIAETVASGNLTSHIDGSGK 240 Q S + ++ L ++ L+ G LLT SITRP++ A++I++ VA+G+LTS G+ Sbjct: 182 QDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMGR 241 Query: 241 DETSKLLQALKTMNDNL 257 DE +L+ +L+ M++ L Sbjct: 242 DELGQLVASLQGMSERL 258 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 113 bits (282), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/259 (31%), Positives = 138/259 (53%), Gaps = 4/259 (1%) Query: 1 MKNYRIGVRLGIGFVAMLMLMAVMVGIGVWRLQGIGDATDDMVKNALQKERTANQWHAAI 60 + + +I VRLG F A++++M V+ G+GV L + DATD++V + K Q + Sbjct: 4 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKV 63 Query: 61 KENGVRTF--AVMRSEDAEFQKFFQAQIDNESKRISVVQKRVEAAVTSPEEKQLFDNVGK 118 G R+ A+M + + E QK + ++D + ++S +E +P +L + + Sbjct: 64 N-TGARSLRNAIM-ARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 119 LRTAYRTAREDIFKMKAAGKVEEAKQLTNTTLVKMMDEYANSVLKYANYQTQVIDDAAGD 178 R Y R + + K +EA + + D+Y +V + ++Q+ ++D +A Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 179 IYQSYQSGRTLLLSLGLIELVLGGLLGWLLTLSITRPLNEAVSIAETVASGNLTSHIDGS 238 + S ++L L + ++L L L+T SITRPLNEAV +A VA+G+LT I+ + Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 239 GKDETSKLLQALKTMNDNL 257 KDET LL ALK+MNDNL Sbjct: 242 SKDETGALLGALKSMNDNL 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.130 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 817,816 Number of extensions: 27061 Number of successful extensions: 188 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 175 Number of HSP's successfully gapped: 30 Length of query: 329 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 243 Effective length of database: 1,212,660 Effective search space: 294676380 Effective search space used: 294676380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 131 (55.1 bits)