BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0013.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313951|ref|YP_003778043.1| glycosylase [Herbaspirillum ser...   166   6e-43

>gi|300313951|ref|YP_003778043.1| glycosylase [Herbaspirillum
           seropedicae SmR1]
          Length = 427

 Score =  166 bits (421), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 82/139 (58%), Positives = 99/139 (71%), Gaps = 18/139 (12%)

Query: 1   LLFVALDAAQTIQLRSAIGSEIPLYGTSQLNPLTLAGATAALNAAAKAAAANTAPPANDS 60
           LLF+ALDA+Q +QLRSA+G+E+PLYGTSQ+NP TL                      ND 
Sbjct: 278 LLFLALDASQAVQLRSAVGTELPLYGTSQINPFTLKRDNP-----------------ND- 319

Query: 61  RLPELDGVHLIDMPWQLQADHAAVAAYPRSVANADGKPNADLERLYALGIDAFRVASEIA 120
           +LPELDGV LID+PWQLQAD+ AVA YPR   N + +PN DL RLYALGIDA+R+A  IA
Sbjct: 320 KLPELDGVRLIDIPWQLQADNVAVARYPRPTINDNERPNPDLARLYALGIDAYRIAYGIA 379

Query: 121 AQHSGFDIDGVTGQINANM 139
            Q SGFD+DGVTG++N NM
Sbjct: 380 QQRSGFDVDGVTGRLNVNM 398


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.127    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 351,240
Number of extensions: 11602
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)