BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0010.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313949|ref|YP_003778041.1| lipoprotein [Herbaspirillum ser...   305   3e-84

>gi|300313949|ref|YP_003778041.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 398

 Score =  305 bits (781), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 146/180 (81%), Positives = 158/180 (87%), Gaps = 5/180 (2%)

Query: 4   GSGRGGYYKDDGPGDQPPEGLLDTPDAEPRVEPYSKSALRPYTVFGKTYTPISDNRPFKQ 63
           GSGRGGYYKDDGPGD  P+GLLD  DAEP+VEP SK+A RPY VFGKTY PI+DN+PF Q
Sbjct: 70  GSGRGGYYKDDGPGDHIPDGLLDVADAEPQVEPVSKAASRPYAVFGKTYVPITDNQPFVQ 129

Query: 64  RGIGSWYGKKFHGQKTSSGELYDMYKMSAAHPTLPIPSYARVTNLKTGAQVVVRINDRGP 123
           RGIGSWYGKKFHGQKTSSGELYDMYKM+AAHPTLPIPSYARVTNLKTG QV+VRINDRGP
Sbjct: 130 RGIGSWYGKKFHGQKTSSGELYDMYKMTAAHPTLPIPSYARVTNLKTGKQVIVRINDRGP 189

Query: 124 FHSTRIIDLSYTAALKLGYLSSGSSELEVERLLPDEIARMAENKRNGIPNTTTATTAAAP 183
           FHS+RIIDLSYTAALKLGYL SGSSELEVER+LP+E  RMA+ +RNG     TA  AA P
Sbjct: 190 FHSSRIIDLSYTAALKLGYLGSGSSELEVERILPEEAQRMADARRNG-----TAVAAADP 244



 Score = 67.0 bits (162), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 210 ETIVVNGLYRLYAGPYATRPAAMDAAQIVRQRSSVTPFVVER 251
           + + VNGLYRLYAGPY TRPAA +AA +VRQRS+ TPF+VER
Sbjct: 357 QAVQVNGLYRLYAGPYPTRPAAQNAAMLVRQRSAGTPFIVER 398


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 661,013
Number of extensions: 24266
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)