BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0009.p
         (157 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313948|ref|YP_003778040.1| rod shape-determining (RodA pro...   286   7e-79
gi|300309677|ref|YP_003773769.1| rod shape-determining (RodA pro...    68   3e-13

>gi|300313948|ref|YP_003778040.1| rod shape-determining (RodA
           protein) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score =  286 bits (731), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 151/157 (96%), Positives = 156/157 (99%)

Query: 1   MMLIDPTSDPLGKGFHIIQSTIAIGSGGVTGKGWLMGTQTHLEFIPERTTDFIFSVFSEE 60
           MMLIDPTSDPLGKGFHIIQSTIAIGSGGVTGKGWLMGTQTHLEFIPERTTDFIFSV+SEE
Sbjct: 213 MMLIDPTSDPLGKGFHIIQSTIAIGSGGVTGKGWLMGTQTHLEFIPERTTDFIFSVYSEE 272

Query: 61  FGLIGNSILVVLYLLLIGRGLMITANAPTLFTRLLGGSITMIFFTYAFVNMGMVSGILPV 120
           FGLIGN +L+VLYLLLIGRGLMITANAPTLFTRLLGG+ITMIFFTYAFVNMGMVSGILPV
Sbjct: 273 FGLIGNIVLLVLYLLLIGRGLMITANAPTLFTRLLGGAITMIFFTYAFVNMGMVSGILPV 332

Query: 121 VGVPLPFMSYGGTALVTLGLGAGILMSIQRHRKLVQT 157
           VGVPLPFMSYGGTALVTLGLGAGILMSIQRHRKLVQ+
Sbjct: 333 VGVPLPFMSYGGTALVTLGLGAGILMSIQRHRKLVQS 369


>gi|300309677|ref|YP_003773769.1| rod shape-determining (RodA
           protein) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 421

 Score = 68.2 bits (165), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 4/152 (2%)

Query: 7   TSDPLGKGFHIIQSTIAIGSGGVTGKGWLMGTQTHLEFIPERTTDFIFSVFSEEFGLIGN 66
             + LGK + +  S IA G G + G G L  +   L ++PE  TDF+ +V  EE G +G 
Sbjct: 265 EENALGKAYQLSHSLIAFGRGELFGVG-LGSSVEKLHYLPEAHTDFLLAVIGEELGFVGV 323

Query: 67  SILVVLYLLLIGRGLMITANAPTL---FTRLLGGSITMIFFTYAFVNMGMVSGILPVVGV 123
            ++V+L+  L+     I   A  L   F  L+   I +     AF+NMG+  G+LP  G+
Sbjct: 324 LVVVLLFYWLVKHAFEIGRQAIALDLTFAGLVAKGIGIWLGVQAFINMGVNLGLLPTKGL 383

Query: 124 PLPFMSYGGTALVTLGLGAGILMSIQRHRKLV 155
            LP MSYGG+ ++   +G  IL+ I    +++
Sbjct: 384 TLPLMSYGGSGVLLNCVGLAILLRIDYENRVL 415


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.145    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 457,610
Number of extensions: 18474
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 157
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,250,540
Effective search space: 98792660
Effective search space used: 98792660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)