BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0008.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313948|ref|YP_003778040.1| rod shape-determining (RodA pro...   341   3e-95

>gi|300313948|ref|YP_003778040.1| rod shape-determining (RodA
           protein) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score =  341 bits (874), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 169/202 (83%), Positives = 183/202 (90%)

Query: 1   MNLHRPPLWQIIKPHLAVFDGALSLIIFLIMSVGIVTLYSAGMNFPGRVEDQLRNILIAF 60
           M+L RPPLWQIIKPHL VFDGALSLI+FLI+SVGIVTLYSAGMNFPGRVEDQLRNIL+AF
Sbjct: 1   MSLQRPPLWQIIKPHLTVFDGALSLIVFLILSVGIVTLYSAGMNFPGRVEDQLRNILVAF 60

Query: 61  IVMWIAANVSPQTLLRFAVPIYTVGVTLLIAVALFGIVKKGSRRWLNIGMVVQPSEIMKI 120
           +VMWIAANVSPQ LLR AVP+YTVGVTLLIAVALFGI+KKGSRRWLNIGMVVQPSEIMKI
Sbjct: 61  VVMWIAANVSPQLLLRLAVPVYTVGVTLLIAVALFGIIKKGSRRWLNIGMVVQPSEIMKI 120

Query: 121 AMPLMLAWYFQKREGMIRWHVFLIAGLLLAVPVGLIIRQPDLGTGVLVLAAGFYVIFFAG 180
           AMPLMLAWYFQKREGM+RW  F++A +LL +P  LIIRQPDLGTG+LVLAAGFYVIFFAG
Sbjct: 121 AMPLMLAWYFQKREGMLRWDAFVVAAILLLIPGFLIIRQPDLGTGLLVLAAGFYVIFFAG 180

Query: 181 LSWKVLTGLAVAGAPPXACRWS 202
           L WK+L GL VAGA      WS
Sbjct: 181 LPWKILAGLFVAGAASLPVVWS 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.143    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 712,344
Number of extensions: 30716
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)